Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1755 356 8e-96 seq2 306 1e-80 seq1407 221 4e-55 seq1569 161 4e-37 seq1857 93.3 2e-16 >seq1755 Length=4651 Score = 356 bits (394), Expect = 8e-96 Identities = 418/555 (75%), Gaps = 20/555 (4%) Strand=Plus/Plus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGC-CCCCTAGACCATCCAGTGC 110 ||| ||||||||||||||| || ||||| ||| | ||||||| ||||||||||| Sbjct 2429 CGGTATTCGGAGTTTGGTTAGGTTTGGTAAATCGGTGAGATCCCCTAGCCCATCCAGTGC 2488 Query 111 TCTACCTCCGGGAAGAAACACG--CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| ||| ||| | || ||||||| |||||||| |||||| |||||||||| Sbjct 2489 TCTACCCCCG--AAGGTATTCGATCGACGCTCTACCTAAATAGATTTCGCGGAGAACCAG 2546 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 ||||| | ||||||||||||||||||||||||| ||||| |||||||| || ||| Sbjct 2547 CTATCTCCAAGTTTGATTGGCCTTTCACCCCTAGCCACAAGTCATCCCAATCTATTGCAA 2606 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | | ||||||||||||||| || ||||| ||||||||||| ||||| |||| Sbjct 2607 CAGATGCGGGTTCGGTCCTCCAGTAAGTGTTACCTTACCTTCAACCTGCTCATGGCTAGA 2666 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||||| | ||||||||| || ||| | ||||||| ||| |||||||||||||| Sbjct 2667 TCACTTGGTTTCGGGTCTAATCCGACGAACTGA-ACGCCCTGTTCAGACTCGCTTTCGCT 2725 Query 349 ACGGCTACCCCACACGGGTTAACCT--CGCGACACAACGCAAACTCGCAGGCTCATTCTT 406 || |||| || ||| |||| || | || || | | || |||| | | |||| | Sbjct 2726 GCGCCTACACCTACCGGTTTAAGCTTGCTCGTCAGA---CTAAGTCGCTGACCCATTATA 2782 Query 407 CAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466 ||||||| |||| |||||| | || ||| ||| ||||| || | ||||||||| Sbjct 2783 CAAAAGGTACGCTGTCACCCAGAAC--AAA----TCTTGGGCTCCAACTGTTTGTAGGCA 2836 Query 467 CATGGTTTCAGGTACTATTTCACTCCCC--GCCAGGGGTACTTTTCACCTTTCCCTCACG 524 ||||||||| || ||||||||||| | | ||||| |||||||||||||||||||| Sbjct 2837 TTCGGTTTCAGGATCTCTTTCACTCCCCTTGTC-GGGGTGCTTTTCACCTTTCCCTCACG 2895 Query 525 GTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGAT 584 ||||| || |||||||||||| | ||||| |||||||| | |||||| | ||| | Sbjct 2896 GTACTGGTTCGCTATCGGTCATGCACGAGTACTTAGGCTTGGAGAGTGGTCTCCCCATGT 2955 Query 585 TCACACGAAATTTCA 599 ||| || |||||| Sbjct 2956 TCAGACAGGATTTCA 2970 >seq2 Length=124989 Score = 306 bits (338), Expect = 1e-80 Identities = 348/460 (76%), Gaps = 18/460 (4%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| |||||| ||||||||| ||| || |||||| | |||||||| ||||||||| Sbjct 4911 GCTGCTCCTAAAAGCATTTCGGAGAGTACGAGCTATTTCCTGGTTTGATTAGCCTTTCAC 4970 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| |||||| |||||| | || |||| | |||||| ||||||||| || Sbjct 4971 CCCTACCCACAGCTCATCCGAGGATGTTGCAACATCCACCAGTTCGGCCCTCCACGCTGT 5030 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCC 316 ||||| |||||||| |||| |||||| |||||||| | |||| |||| | | | Sbjct 5031 TTTACCAGCGCTTCAGCCTGGCCATGGGTAGATCACCAGGTTTCGCGTCTAGCTTCTATG 5090 Query 317 ACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCAC----ACGGGTTAACC 372 ||| | ||||||||||| |||||||||||||| ||||| | || | | || |||||| Sbjct 5091 ACTTA-ACGCCCTATTCAGACTCGCTTTCGCTTCGGCTGCTCCTCTTATAAGGATTAACC 5149 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT---GGT 429 | || | | || | |||||| ||||||||| | |||||||||||||||||| | ||| Sbjct 5150 TTGCCAAAGAAGACTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACTTCATGGT 5209 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | |||| | ||||||||| | ||||| || ||||||||||| ||| |||||| Sbjct 5210 A--TAAACCAGA----AGCTCCGACCGCTTGTAAGCGTATGGTTTCAGGAACT-TTTCAC 5262 Query 490 TCCCCGC--CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 |||| ||||| ||||||||||||||||||||||||||| || | ||||||||| | Sbjct 5263 TCCCTTATTCAGGG-TACTTTTCACCTTTCCCTCACGGTACTAGTTCACTATCGGTCTCT 5321 Query 548 AAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 || ||||||||| ||| | | |||| | | | |||||| Sbjct 5322 CAGTAGTATTTAGCCTTGCCAGATGGTGCTGGCGGATTCA 5361 >seq1407 Length=3311 Score = 221 bits (244), Expect = 4e-55 Identities = 255/337 (76%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCAT 103 ||||| || |||||||||||| | || |||||| | | | |||||||| | | Sbjct 1089 CACTTGTAGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAA 1030 Query 104 CCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162 |||||||||||| || | || ||| | | |||| |||||||| ||||| |||| Sbjct 1029 ACAGTGCTCTACCCCCTACAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGAG 972 Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222 ||||||||||| | || |||||| ||||||||| || ||||||||||||||| || | | Sbjct 971 AACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAGGTCATCCGCTAACT 912 Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282 ||||||| ||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 911 TTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATG 852 Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342 |||||||| | | ||||||||| | || ||| | |||||||||| |||||||| Sbjct 851 GATAGATCGCCCGGTTTCGGGTCTATTCCCAGCGACT-AGACGCCCTATTAAGACTCGCT 793 Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGAC 379 ||||||||| || ||| | | |||||| ||||| || Sbjct 792 TTCGCTACGCCTCCCCTATTC-GGTTAAGCTCGCCAC 757 >seq1569 Length=2469 Score = 161 bits (178), Expect = 4e-37 Identities = 217/297 (73%), Gaps = 9/297 (3%) Strand=Plus/Plus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTC 112 |||||||||||||| || || |||| | || ||||| ||| |||| |||| Sbjct 2177 GCATTCGGAGTTTGTCTGGATTTGGTAGGATTTGACTCCCCCGCACCCAATCAGTAGCTC 2236 Query 113 TACCTCCGGGAAGAA----ACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| || || || | | |||||| |||||| |||||||||||| || || Sbjct 2237 TACCTCTA--AATAACTTTAC-CTCAACGCTGTTCCTAAAAACATTTCGGGGAGTACGAG 2293 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 |||| | ||||||||| |||||||||||||| |||||| |||||| | ||||||| Sbjct 2294 CTATTTCCCAGTTTGATTAGCCTTTCACCCCTACCCACAGATCATCCGGAAACTTTTCAA 2353 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | | |||||||||||||| || ||||| |||||||||| |||||| |||| Sbjct 2354 CGTTTATCGGTTCGGTCCTCCAGTACGTGTTACCGCACCTTCAACCTGTCCATGGGTAGA 2413 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 |||| | |||| |||| || ||| ||||||||||||| ||||||||||| Sbjct 2414 TCACAAGGTTTCGCGTCTACCTCCCCTGACT-ATACGCCCTATTCAGACTCGCTTTC 2469 >seq1857 Length=1661 Score = 93.3 bits (102), Expect = 2e-16 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAA 566 |||| |||||||||||||||||| || | ||||||||| | |||||||||||| |||| Sbjct 1 TTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTAC 60 Query 567 CGGGTGGTCCCGCCAGATTCACAC 590 ||| |||| ||| ||||||| ||| Sbjct 61 CGGATGGTGCCGGCAGATTCCCAC 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817458699776