Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001232.1 Length=307 Score E Sequences producing significant alignments: (Bits) Value seq1126 282 7e-74 seq4950 78.8 2e-12 >seq1126 Length=26775 Score = 282 bits (312), Expect = 7e-74 Identities = 246/306 (80%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 2 GAAATCGACGATAAAGAAGTCACACTCGCCCACGGCCCCTTCAAGACACTGGGCATGCAG 61 || ||| |||| ||||||||||| ||||||||||| |||||||||||| |||| |||| Sbjct 8028 GAGATCAACGACAAAGAAGTCACGCTCGCCCACGGTCCCTTCAAGACATTGGGTATGCCA 8087 Query 62 GGCATGACGATGACGTTTCCACTTGCCAATCCTACCCTGATTCAGGGTCTGAAAACGGGC 121 |||||||||||||| || || || |||| |||| | ||||| |||| || ||||||||| Sbjct 8088 GGCATGACGATGACTTTCCCTCTCGCCACTCCTGCTCTGATGAAGGGCCTAAAAACGGGC 8147 Query 122 GACAAGGTTCGGGTCGCGGTGAGCCAAACCGACGATGGATTGCGTGTCGAACGTCTAGAT 181 |||||||||||| |||| || ||||| || |||||||| ||||||| |||||||| || Sbjct 8148 GACAAGGTTCGGATCGCTGTTAGCCAGACGGACGATGGTCTGCGTGTTGAACGTCTGGAA 8207 Query 182 AAAACGGGAGGTCAGCCATGATCGCTGCCCTCATCCGTTGGTCTGTTGCCAACCGCTTTT 241 | || || |||||||||| || ||||| || || ||||| || |||||||||||| Sbjct 8208 CGCTCTGGGGGCCAGCCATGATTGCGGCCCTTATTCGCTGGTCGGTGGCCAACCGCTTTC 8267 Query 242 TGGTGCTGTTGGCGACACTTTTCGTCACAGCTTGGGGCATCTGGTCAGTTCAGAACACAC 301 | ||| || ||||||| || |||||||| || ||||| |||||| | ||||| | || | Sbjct 8268 TTGTGTTGCTGGCGACGCTGTTCGTCACGGCATGGGGGATCTGGGCGGTTCAAAGTACGC 8327 Query 302 CAATCG 307 | |||| Sbjct 8328 CCATCG 8333 >seq4950 Length=970 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 220 TGGTCTGTTGCCAACCGCTTTTTGGTGCTGTTGGCGACACTTTTCGTCACAGCTTGGGGC 279 ||||| || |||||||||||||||||| |||||||||| | ||||| || || ||||| Sbjct 968 TGGTCGGTGGCCAACCGCTTTTTGGTGTTGTTGGCGACTTTATTCGTGACGGCCTGGGGT 909 Query 280 ATCTGGTCAGTTCAGAACACACC 302 | ||||| | |||||||| || Sbjct 908 TTGTGGTCGATCCAGAACACCCC 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 879931588800