Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1755 325 1e-86 seq1407 313 6e-83 seq2 199 1e-48 seq1569 107 5e-21 seq1857 98.7 2e-18 >seq1755 Length=4651 Score = 325 bits (360), Expect = 1e-86 Identities = 330/416 (79%), Gaps = 14/416 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| || | || || |||| | | |||||||||||||||| ||| ||| Sbjct 2581 CCACAAGTCATCCCAAT--CTATTGCAACAGATGCGGGTTCGGTCCTCCAGTAAGT-GTT 2637 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| |||||||| ||| || |||||| | ||||| |||||||| | || | Sbjct 2638 ACCTTACCTT-CAACCTGCTCAT-GGCTAGATCACTTGGTTT-CGGGTCTAAT-CCGACG 2693 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| ||||||| | ||||||||||| |||| ||||| | |||| | |||||||| Sbjct 2694 AACTGAACGCCCTGTTCAGACTCGCTTT-CGCTGCGCCTACACCTACCGGTTTAAGCTT- 2751 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG 245 || | | | |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 2752 GCTCGTCAGACTAAGTCGCTGACCCATTATACAAAAGGTACGCTGTCACCCAGAACAAAT 2811 Query 246 --TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 |||||||| |||| ||||| |||| |||||||||||||| |||||||||||| ||| Sbjct 2812 CTTGGGCTCCAACTGTTTGTAGGCATTCGGTTTCAGGATCTCTTTCACTCCCCTTGTCGG 2871 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||| |||||| |||||||||||||||||| |||| |||||||||| || |||| |||| Sbjct 2872 GGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCGCTATCGGTCATGCACGAGTACTTAG 2931 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||| ||||| |||||| |||||||| |||| |||| ||| ||||||| Sbjct 2932 GCTTGGAGAGTGGTCTCCCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTC 2987 >seq1407 Length=3311 Score = 313 bits (346), Expect = 6e-83 Identities = 208/219 (95%), Gaps = 9/219 (4%) Strand=Plus/Minus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 937 TCCGATCCACAGGTCAT-CCGCTAACTTTT-CAACGGTAGTCGGTTCGGTCCTCCAGTTA 880 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| || Sbjct 879 GT-GTTACCCAACC-TTCAACCTGCCCAT-GGATAGATCGCCCGG-TTTCGGGTCTA-TT 825 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 824 CCCAGCGACTAGACGCCCTATTAAGACTCGC-TTTCGCTACGCCTCCCCTATTCGGTTAA 766 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAA 221 || | |||||||||||||||||||||||||||||||||| Sbjct 765 GC-TCGCCACTGAAAATAAGTCGCTGACCCATTATACAA 728 Score = 87.8 bits (96), Expect = 4e-15 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 373 ATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 ATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 532 >seq2 Length=124989 Score = 199 bits (220), Expect = 1e-48 Identities = 284/386 (74%), Gaps = 19/386 (5%) Strand=Plus/Plus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 |||||| |||||| || ||||| | | |||| |||| |||| || |||||| || Sbjct 5012 GTTCGGCCCTCCACGCTGTT-TTACC-AGCGCTTCAGCCTGGCCATGGG-TAGATCACCA 5068 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 ||||| || ||||| | | | |||| |||||||| | ||||||||||| |||| || Sbjct 5069 GGTTT-CGCGTCTAGCTTCTAT-GACTTAACGCCCTATTCAGACTCGCTTT-CGCTTCGG 5125 Query 166 CTCCCC----TATTCGGTTAAGCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACA 220 || | | ||| || | | | |||||| ||| | ||| ||| | | |||||| || Sbjct 5126 CTGCTCCTCTTATAAGGATTAACCTTGCCAAAGAAGACTAACTCGTAGGCTCATTATGCA 5185 Query 221 AAAGGTACGCAGTCACC-CA----ACAAAGTGG--GCTCCCACTGCTTGTACGCATACGG 273 ||||| |||| ||||| || | ||| | ||||| || ||||||| || || || Sbjct 5186 AAAGGCACGCCGTCACTTCATGGTATAAACCAGAAGCTCCGACCGCTTGTAAGCGTATGG 5245 Query 274 TTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333 |||||||| || |||||||||| | | | |||| |||||| ||||||||||||||||||| Sbjct 5246 TTTCAGGAACT-TTTCACTCCCTTATTCAGGGTACTTTTCACCTTTCCCTCACGGTACTA 5304 Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGAC 393 |||||||||||||| ||||||||||||||||||| |||||| | | |||||| | Sbjct 5305 GTTCACTATCGGTCTCTCAGTAGTATTTAGCCTTGCCAGATGGTGCTGGCGGATTCAGTC 5364 Query 394 AAAGTTTCTCGTGCTCCGTCCTACTC 419 || |||| | | || ||||||| Sbjct 5365 AATTTTTCACCGGAATCGACCTACTC 5390 >seq1569 Length=2469 Score = 107 bits (118), Expect = 5e-21 Identities = 118/148 (80%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| ||| ||||||| ||||| | |||||||||||||||||| || ||| Sbjct 2328 CCACAGATCAT-CCGGAAACTTTT-CAACGTTTATCGGTTCGGTCCTCCAGTACGT-GTT 2384 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||| ||||||||| |||| || |||||| | || ||||| ||||| |||| Sbjct 2385 ACCGCACC-TTCAACCTGTCCAT-GGGTAGATCACAAGG-TTTCGCGTCTACCTCCC-CT 2440 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTT 156 ||||| |||||||| | ||||||||||| Sbjct 2441 GACTATACGCCCTATTCAGACTCGCTTT 2468 >seq1857 Length=1661 Score = 98.7 bits (108), Expect = 2e-18 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| Sbjct 1 TTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTAC 60 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTC 403 ||||||| || || |||| |||| | |||| Sbjct 61 CGGATGGTGCCGGCAGATTCCCACAAGGCGTCTC 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241503478016