Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq606 217 3e-54 seq54 165 2e-38 seq2442 154 3e-35 seq204 73.4 8e-11 >seq606 Length=289815 Score = 217 bits (240), Expect = 3e-54 Identities = 231/304 (76%), Gaps = 17/304 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 528 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 587 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 588 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGAT 647 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| ||| | ||||||||| |||||| |||| || |||| || Sbjct 648 CGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAATCCAACGCGGGCTCATCCATCT 707 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||||||||||| || ||| || | ||| |||||||||| | Sbjct 708 CCGATAAATCTTT-CTC-CCGAAGGACG--------------TATACGGTATTAGCACAC 751 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| ||||||||| || || || || | |||| |||||||||||||| || Sbjct 752 GTTTCCATGCGTTATTCCGTAGAGATGGGTAGATT-CCCACGCGTTACTCACCCGTCTGC 810 Query 301 CACT 304 | || Sbjct 811 CGCT 814 >seq54 Length=99412 Score = 165 bits (182), Expect = 2e-38 Identities = 217/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||| || | ||||||| |||||| ||| ||||||||||||||||| Sbjct 14044 GGCATGGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCCTACTGCTGCCTCCCGTAG 14103 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||| ||||||| ||| ||||| | |||||||| | ||||| || Sbjct 14104 GAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGACTTTCCTCTCAGAACCCCTACCCAT 14163 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || |||| ||||||||||| ||||| || ||| ||||||||| | Sbjct 14164 CGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATGGGACGCATGCCCATCTTGTA 14223 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 || | |||| || | | ||| | | || | |||| |||||| || Sbjct 14224 CCGCCGGAGCTTTCATCTCAATAACATGTGTTAATGGGATAATATGGAGTATTAATTCTC 14283 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | | ||| | | | |||| || || | ||||||||| ||||||||||| Sbjct 14284 GTTTCCGAGAGCTATGCTCCAGTACAAGGTAGATTACATACGTGTTACGCACCCGTCCGC 14343 Query 301 C 301 | Sbjct 14344 C 14344 >seq2442 Length=2623 Score = 154 bits (170), Expect = 3e-35 Identities = 192/261 (74%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 46 TGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105 ||||||||||||||||||||||| |||||||||||| ||| ||||| | ||| |||||| Sbjct 403 TGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTC 462 Query 106 AGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCG 165 || | ||| ||||||| |||||||||| ||| | | ||||||| ||||| || Sbjct 463 AGATCCCCTAGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACG 522 Query 166 CGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTAT 225 | ||||||||| | |||||| |||| || | || |||| ||||| || |||| Sbjct 523 CATGCCCATCTTAATCCTATAAATATTTGAACATTGGATAATGCTATCCTGTGTTTTTAT 582 Query 226 GCGGTATTAGCGTTCG--TTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGT 283 ||||| ||| | || |||| | ||| || || |||| ||||||| ||| Sbjct 583 GCGGTCTTA--ATCCGAATTTCTTCGGGCTATCCCCCTGATTAAGGTAGGTTGCATACGC 640 Query 284 GTTACTCACCCGTCCGCCACT 304 ||||| ||||||| ||||||| Sbjct 641 GTTACGCACCCGTGCGCCACT 661 >seq204 Length=6015 Score = 73.4 bits (80), Expect = 8e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282 |||||||||||||||| ||||||| ||||||| || | || |||||| || || | | Sbjct 5416 TATGCGGTATTAGCGTCCGTTTCCGGACGTTATCCCCCACTACCAGGCAGATTCCT-AGG 5358 Query 283 TGTTACTCACCCGTCCGCCACT 304 ||||||||||||||||| || Sbjct 5357 CATTACTCACCCGTCCGCCGCT 5336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998322384384