Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001581.1 Length=660 Score E Sequences producing significant alignments: (Bits) Value seq4455 125 3e-26 seq5571 100 1e-18 seq3919 100 1e-18 >seq4455 Length=622 Score = 125 bits (138), Expect = 3e-26 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 514 CGTTGACCAGGCTGCCCAGCAGTTCGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCAT 573 |||| |||||||||||||||| ||||| ||||| |||| ||||||||| ||| | Sbjct 603 CGTTCACCAGGCTGCCCAGCAACTCGCAGCGCAGCGGTTGGCGGGTGTCGCCGGCGGCGT 544 Query 574 AGGCATAGCGAGCGAGCATCGCGTTCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGG 633 ||||||| || || | || |||||||||||||| |||||||| ||| ||| ||||||| Sbjct 543 AGGCATAACGCGCCAACAGGGCGTTCCAGGCGCCGAACACCAGCGGCACGGCAAACCAGG 484 Query 634 CCAGCAGCGCCGGCAGTGG 652 |||||| | |||||| || Sbjct 483 CCAGCAACAGCGGCAGCGG 465 >seq5571 Length=391 Score = 100 bits (110), Expect = 1e-18 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60 ||| || ||||||| ||| |||| ||| |||| ||| ||||||||||| ||||| || Sbjct 260 CGAGAAGACCGTGCCACCCGACACCCTCAGCCTGGCGGATTTCTTCAGCGCGATTGATCA 319 Query 61 GATGCCTCAGGCGGAAAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCC 108 |||||| ||||| |||||||| |||||||| || || || || ||||| Sbjct 320 GATGCCCCAGGCTGAAAAGGACCTTGCCGCGCCGGCCGAACCTGAGCC 367 >seq3919 Length=636 Score = 100 bits (110), Expect = 1e-18 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60 ||| || ||||||| ||| |||| ||| |||| ||| ||||||||||| ||||| || Sbjct 619 CGAGAAGACCGTGCCACCCGACACCCTCAGCCTGGCGGATTTCTTCAGCGCGATTGATCA 560 Query 61 GATGCCTCAGGCGGAAAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCC 108 |||||| ||||| |||||||| |||||||| || || || || ||||| Sbjct 559 GATGCCCCAGGCTGAAAAGGACCTTGCCGCGCCGGCCGAACCTGAGCC 512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2006239148166