Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001590.1 Length=402 Score E Sequences producing significant alignments: (Bits) Value seq2536 271 2e-70 seq4685 163 7e-38 seq3763 163 7e-38 >seq2536 Length=1669 Score = 271 bits (300), Expect = 2e-70 Identities = 274/355 (77%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 1 CGAGGACATCTACAGCCGAAAGGCCGTGGGCTGGGAAGTTTACGAGCAAGAAAGTGGCGA 60 |||||| || |||||||| ||||||||||||||||| || ||||| ||||| || || Sbjct 603 CGAGGATATTTACAGCCGCAAGGCCGTGGGCTGGGAGGTCTACGACGCGGAAAGCGGTGA 544 Query 61 GCTGGCGGCCGAACTGATGCAGCGCACCGTGCTCACCGAACGCTGCGC---CGGACGGCC 117 || |||| ||| |||| |||| |||| || || | || || || || Sbjct 543 AAAAGCCGCCGCGCTGCTGCAACGCAGCGTGATCGGTGAGCAGTGTTTACACGAACCGC- 485 Query 118 CTTAGTGCTGCACTCGGACAACGGTGCACCGATGAAATCGGTGACGTTGCTGAGCAAACT 177 | |||||||||||||||||||| || |||||||||||||||||| |||||||||| | Sbjct 484 --TGGTGCTGCACTCGGACAACGGAGCGCCGATGAAATCGGTGACGCTGCTGAGCAAGAT 427 Query 178 GTACGAACTCGGCATCACCCCGTCACGCGGACGACCACGGGTGAGTAACGATAATCCCTA 237 |||||| || |||||||| || || || || ||||| || ||||| ||||| |||||||| Sbjct 426 GTACGACCTGGGCATCACGCCTTCGCGGGGCCGACCGCGTGTGAGCAACGACAATCCCTA 367 Query 238 CTCAGAATCGCTGTTTAGAACCCTGAAATATTGCCCGCAATGGCCTCCTGGTGGTTTTGC 297 ||| || |||||||||||||| |||||||| |||||||||||||| | | ||||||||| Sbjct 366 CTCGGAGTCGCTGTTTAGAACGCTGAAATACTGCCCGCAATGGCCGCTGGATGGTTTTGC 307 Query 298 AGATTTGGACGCGGCACGCAGCTGGGTGCGCGATTTTATCCGCTGGTACAACCAC 352 | |||| || || || |||||| | ||||||| || ||||||||| || Sbjct 306 CAGTCTGGATGCTGCTCGGGCTTGGGTGAGGAATTTTATGCGGTGGTACAACAAC 252 >seq4685 Length=354 Score = 163 bits (180), Expect = 7e-38 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 1 CGAGGACATCTACAGCCGAAAGGCCGTGGGCTGGGAAGTTTACGAGCAAGAAAGTGGCGA 60 ||| || ||||||||||||||||| |||||||||||||||||||| ||||||||| || Sbjct 225 CGAAGATATCTACAGCCGAAAGGCGGTGGGCTGGGAAGTTTACGACGCAGAAAGTGGTGA 166 Query 61 GCTGGCGGCCGAACTGATGCAGCGCACCGTGCTCACCGAACGCTGCGCCGGACGGCCCTT 120 || || | | | |||| || | |||| | |||| ||| | | ||| | Sbjct 165 AAAAGCAGCGGTATTACTGCAACGAAGCGTGACCCAGGAACAGTGCTGGCGCCAGCCTCT 106 Query 121 AGTGCTGCACTCGGACAACGGTGCACCGATGAAATCGGTGACGTTGCTGAGCAAACTGTA 180 ||| ||||||| |||||||| || |||||||| ||||||||| |||||| ||| |||| Sbjct 105 GGTGTTGCACTCTGACAACGGCGCGCCGATGAAGTCGGTGACGCTGCTGACCAAGATGTA 46 Query 181 CGAACTCGGCATCACCCCGTCACGCGGACGACCACGGGTGAGTAA 225 ||| || |||||||| ||||| || || ||||| ||||| || || Sbjct 45 CGATCTGGGCATCACGCCGTCGCGTGGTCGACCGCGGGTCAGCAA 1 >seq3763 Length=354 Score = 163 bits (180), Expect = 7e-38 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 1 CGAGGACATCTACAGCCGAAAGGCCGTGGGCTGGGAAGTTTACGAGCAAGAAAGTGGCGA 60 ||| || ||||||||||||||||| |||||||||||||||||||| ||||||||| || Sbjct 130 CGAAGATATCTACAGCCGAAAGGCGGTGGGCTGGGAAGTTTACGACGTAGAAAGTGGTGA 189 Query 61 GCTGGCGGCCGAACTGATGCAGCGCACCGTGCTCACCGAACGCTGCGCCGGACGGCCCTT 120 || || | | | |||| || | |||| | |||| ||| | | ||| | Sbjct 190 AAAAGCAGCAGTATTACTGCAACGAAGCGTGACCCAGGAACAGTGCTGGCGCCAGCCGCT 249 Query 121 AGTGCTGCACTCGGACAACGGTGCACCGATGAAATCGGTGACGTTGCTGAGCAAACTGTA 180 ||||||||||| |||||||| || |||||||| ||||||||| |||||| ||| |||| Sbjct 250 GGTGCTGCACTCTGACAACGGCGCGCCGATGAAGTCGGTGACGCTGCTGACCAAGATGTA 309 Query 181 CGAACTCGGCATCACCCCGTCACGCGGACGACCACGGGTGAGTAA 225 ||| || |||||||| || || || || ||||| ||||| || || Sbjct 310 CGATCTGGGCATCACGCCATCTCGTGGTCGACCGCGGGTCAGCAA 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183907955840