Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1755 203 8e-50 seq1407 192 1e-46 seq2 161 2e-37 seq1569 78.8 2e-12 >seq1755 Length=4651 Score = 203 bits (224), Expect = 8e-50 Identities = 303/422 (72%), Gaps = 26/422 (6%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | |||| ||||| | Sbjct 1961 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAACCCTGCTCAGATTAACTTTAAG 2020 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC-CCGTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | || ||| || | || |||||||| | Sbjct 2021 CAGGAACCCTTGGACTTTCGGCGAGGGAGTCTCTCACTCCCTTTATCGTTACTCATGTCA 2080 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAG-CTTCACCA-CTGACA 176 ||||||||||| | || | ||||| | | |||| | | ||||| | || ||| Sbjct 2081 GCATTCTCACTTCTGAT-ACCTCCAAGAGCCC-TCACGGGTCTCTCTTCAACGGCTTACA 2138 Query 177 CGACGCTCCCCTACCCAACC-----ACAC--AGGTTGC--------CACAGCTTCGGCGG 221 ||||||| ||||| || || | ||||| | ||||||||||| | Sbjct 2139 GAACGCTCCGCTACCACTCCCGGGAACCCGAAGGTTCCAAAGAATCCACAGCTTCGGTGT 2198 Query 222 ATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATT 276 || ||| ||||||| |||||| ||||||| | | ||| |||||||||||| || Sbjct 2199 ATGGCTTTAGCCCCGGTACATTTTCGGCGCAAAGACCCTTATTTAGACCAGTGAGCTGTT 2258 Query 277 ACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCA 336 |||| ||||| || |||||||||||| |||||||| |||||||||| | | | | || Sbjct 2259 ACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGTTGTTTTGGGATCCTCA 2318 Query 337 CATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 |||||||||||||| || || |||||||| |||||| || || || ||| |||| |||| Sbjct 2319 CATCCTTTCCCACTTAGCCATAACTTAGGGACCTTAGATGGTGGTCAGGGTTGTTGCCCT 2378 Query 397 CT 398 || Sbjct 2379 CT 2380 >seq1407 Length=3311 Score = 192 bits (212), Expect = 1e-46 Identities = 291/405 (72%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | | || ||| | | Sbjct 1536 CGACTACGCTTTTCAGCCTCGCCTTAGGGACCGACTAACCCTGCGTCGATTAACGTTGCG 1477 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATT--CCCACCCGTCACACGCTACTCATGCC 118 | |||| |||||| |||||| | | || | ||||| | | || |||||||| | Sbjct 1476 CAGGAAACCTTGGTCTTTCGGCGTGGGTGTTTTTCACACCCATTAT-CGTTACTCATGTC 1418 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | || | || |||||| || ||| Sbjct 1417 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 1360 Query 177 CGACGCTCCCCTACCCAACCACAC--AGGTTG---CCACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | ||| | |||| || |||||||| | || || || Sbjct 1359 GAACGCTCCTCTACCGCATCACCCGAAGGTGATACCCGTAGCTTCGGTGTATGGTTTGAG 1300 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| ||| Sbjct 1299 CCCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAG 1240 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| Sbjct 1239 GGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACTT 1180 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | || |||| ||| |||||||||| | |||||| ||||||||| Sbjct 1179 AACCATAACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 1135 >seq2 Length=124989 Score = 161 bits (178), Expect = 2e-37 Identities = 288/408 (71%), Gaps = 18/408 (4%) Strand=Plus/Plus Query 5 TACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGG 64 ||||||| ||||| | |||||| |||||| ||||| || ||| | | | || ||| Sbjct 4374 TACGCCTTTCGGCTACAGCTTAGGCTCCGACTAACCCACGGATGACTAGCATAGCCGTGG 4433 Query 65 AACCCTTGGATAATCGGCGGACGGGATTCCCACC--CGTCACACGCTACTCATGCCTGCA 122 || |||| | | |||| | || |||||||| | | | ||| |||| |||||| || Sbjct 4434 AAACCTTAGTTTTTCGGTGTGTTGGTTTCCCACCAACATTA-ACGTTACTTATGCCTACA 4492 Query 123 TTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGACGC 182 || || | | | | ||||| || ||| ||| || ||||| | || | | || Sbjct 4493 TTTTCTTTTCTAACCAATCCACGGCA-AGTTACCTTGCCGCTTCTGCTTTGTTAGAATGC 4551 Query 183 TCCCCTACCCA--ACCACAC-AGGTT-----GCCACAGCTTCGGCGGATAA-CTTAAGCC 233 || ||||||| | || | | || |||| |||||||| ||| ||||| | Sbjct 4552 TCTCCTACCCCCTATTACCCTAAGTAATAGAGCCATAGCTTCGGTA-ATATGCTTAATGC 4610 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| | ||||| ||||| |||||||||||| ||||||||||||| || || Sbjct 4611 CCGTTT-ATTCTTGGCGCCCTGTCACTCGACCAGTGAGCTGTTACGCACTCTTTGAATGA 4669 Query 294 -TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTT--TCCCACT 350 ||||||||||||||||||| |||||| ||||| |||||| || ||||| | | ||| Sbjct 4670 ATGGCTGCTTCCAAGCCAACATCCTGGCTGTCTTAGCAACTGGACTTCCTTTGTTCAACT 4729 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || | || ||| |||||||||||| |||||| ||||||||||| Sbjct 4730 TAGCATATATTTTGGGACCTTAGCTGATGGTCTGGGTTGTTTCCCTCT 4777 >seq1569 Length=2469 Score = 78.8 bits (86), Expect = 2e-12 Identities = 82/105 (78%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| |||||||| | | |||||| |||| | |||||| || ||| || ||| | Sbjct 1938 CCATAGCTTCGGTGTACTACTTAATGCCCGTTT-ATTATCCATGCACGATCGCTCGACTA 1996 Query 267 GTGAGCTATTACGCACTCTTTCAA-GGATGGCTGCTTCCAAGCCA 310 ||||||| ||||||||||||| || | |||||||||||||||||| Sbjct 1997 GTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCA 2041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177508453376