Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1857 102 7e-20 seq54 80.6 2e-13 >seq1857 Length=1661 Score = 102 bits (112), Expect = 7e-20 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| | ||||| ||| || |||| || |||| ||| | | || Sbjct 1258 TCGAGTTGCAGACCTCTATCCGAACTGTGAATGGCTTTTTGAGATTCGCTTGCTGTTGCC 1317 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||||||||| |||||||| ||||||| ||||| | ||||||||| Sbjct 1318 AGCTTGCTGCCCTCTGTACCATCCATTGTAGCACGTGTGTAGCCCCGGACGTAAGGGCCA 1377 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTG 157 ||| ||||||||||| ||||| |||||||| | ||||| Sbjct 1378 TGATGACTTGACGTCGTCCCCTCCTTCCTCTCTGTTTG 1415 >seq54 Length=99412 Score = 80.6 bits (88), Expect = 2e-13 Identities = 109/151 (72%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| ||||||| ||| || |||| ||||||| || | | | Sbjct 13132 TCGAGTTGCAGACCTCAATCCGAACTGAGACGTGCTTT-TGGGATTTGCCGTCTGTTACC 13190 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || || |||||| |||||||| ||||||| |||||| | |||| |||| Sbjct 13191 AGAAAGCATCCTTCTGTACACGCCATTGTAGCACGTGTGTAGCCCTGGGCGTAAGAGCCA 13250 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCC 151 ||| ||| |||| |||||||| ||||||||| Sbjct 13251 TGATGACCTGACCTCATCCCCTCCTTCCTCC 13281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415968670780