Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq606 260 2e-67 seq54 212 1e-52 seq204 113 7e-23 seq2108 111 3e-22 seq6 89.7 9e-16 seq2442 82.4 1e-13 seq6876 75.2 2e-11 >seq606 Length=289815 Score = 260 bits (288), Expect = 2e-67 Identities = 227/282 (80%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | |||| | ||||||||||||||||||| Sbjct 179 CCCACGCTTTCGCACCTCAGCGTCAGTATCGAGCCAGTGAGCCGCCTTCGCCACTGGTGT 238 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||| |||||||| |||||| ||||||||| | |||||| | || Sbjct 239 TCCTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTCACCTCTCTCGAAC 298 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | |||| ||||| |||| ||||||||||| | |||||| |||||| Sbjct 299 TCAAGACTACCAGTATCAAAGGCAGTTCCGGGGTTGAGCCCCGGGATTTCACCCCTGACT 358 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | |||||||| || |||||| |||| |||||||| | |||||| ||| ||| || Sbjct 359 TAATAGTCCGCCTACGTGCGCTTTACGCCCAGTAAATCCGAACAACGCTAGCCCCCTTCG 418 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 419 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 460 >seq54 Length=99412 Score = 212 bits (234), Expect = 1e-52 Identities = 223/291 (77%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | |||| || | |||||||| | |||| | Sbjct 13675 CCCACGCTTTCGTGCCTCAGCGTCAGTACAAGGCCAGTAAGCTGCCTTCGCTATTGGTAT 13734 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||||| ||||||||| ||||||| ||||| | || ||||||| || Sbjct 13735 TCCTTATGGTATCTAAGCATTTCACTGCTACACCATAAATTCTGCTTACCTCTCCTTGAC 13794 Query 121 TCAAGAAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 ||||| ||||||||| ||| ||| | || ||| | | |||||| ||||| Sbjct 13795 TCAAGCTCTCCAGTTTCAATGGCATTTCTAATG-TTAAGCACTAGGATTTCACCACTGAC 13853 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || |||||||| | ||||||| |||||||||||||||||||||||||| ||| | Sbjct 13854 TTAAAAAGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTTGCACCCTCC 13913 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||| ||||||||| |||||||| | |||| Sbjct 13914 GTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCTTATGGTA 13964 >seq204 Length=6015 Score = 113 bits (124), Expect = 7e-23 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 7 CTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCC 66 ||||||| |||||| |||||| | |||||| |||||||||||||||||||||| | Sbjct 6015 CTTTCGCACCTCAGTGTCAGTATCAGTCCAGGTGGTCGCCTTCGCCACTGGTGTTCCTTC 5956 Query 67 GTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGA 126 ||||||||||||||||||||||||||| | |||||| ||||| | |||| || Sbjct 5955 CTATATCTACGCATTTCACCGCTACACAGGAAATTCCACCACCCTCTACCATACTCTAGC 5896 Query 127 AAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCC 161 |||||| ||||||| |||||||||| Sbjct 5895 TCGTCAGTTTTGAATGCAGTTCCCAGGTTGAGCCC 5861 >seq2108 Length=210 Score = 111 bits (122), Expect = 3e-22 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 |||||||| |||||| |||||| | |||| | |||||||||| ||| |||||| Sbjct 1 GCTTTCGCACCTCAGTGTCAGTATTAGGCCAGATGGCTGCCTTCGCCATCGGTATTCCTC 60 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTC--CGATTGCCTCTCCAGCACTCA 123 | || |||||||||||||||||||||| ||||||| | || ||||||| |||| Sbjct 61 CAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCAT--CCTCTCCCATACTCT 118 Query 124 AGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGC 183 || || |||| || |||||| ||| ||| | | |||||||| |||||| Sbjct 119 AGCCAACCAGTATCGAATGCAATTCCCAAGTTAAGCTCGGGGATTTCACATTTGACTTAA 178 Query 184 CTTCCCGCCTACACGCCCTTTACACCCAATAA 215 | || ||||| ||| |||||| |||| ||| Sbjct 179 TTGGCCACCTACGCGCGCTTTACGCCCAGTAA 210 >seq6 Length=53452 Score = 89.7 bits (98), Expect = 9e-16 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| |||||||| |||||| || |||| ||||||| ||| ||| ||||| Sbjct 52584 CCGCCTACTTACCCTTTACGCCCAATCCTAACGAATAATGCTTGCCCCCTCCGTTTTACC 52525 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATT 281 ||||||||||||||| | ||||||| ||||| || Sbjct 52524 GCGGCTGCTGGCACGAAATTAGCCGGGGCTTTTT 52491 >seq2442 Length=2623 Score = 82.4 bits (90), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 10/208 (5%) Strand=Plus/Plus Query 3 CACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTC 62 |||||||||| |||||||||||| | || || || | |||||||| | ||||||| Sbjct 1 CACGCTTTCGTGCCTCAGCGTCAATAACACCATAGTAAGCTGCCTTCGCAATCGGTGTTC 60 Query 63 CTCCGTATATCTACGCATTTCACCGCTAC---ACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| ||||||||||||||| ||| |||||| | ||||| | | Sbjct 61 TGTGACATATCTATGCATTTCACCGCTACTTGTCAC---ATTCCGCCTACCTCTAGTGTA 117 Query 120 CTCAAGAAAAACAGTTTCAAATGCA-GGCTATGGGTTGAGCCCATAGT-TTTCACATCTG 177 ||||| | |||| |||| ||| || || ||||||| ||| || |||||| ||| Sbjct 118 TTCAAGCTCATCAGTATCAAGGGCACTGCGAT-GGTTGAG-CCACCGTCTTTCACCCCTG 175 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTA 205 |||| |||||||| | ||||||| Sbjct 176 ACTTAATAAGCCGCCTACGCACCCTTTA 203 >seq6876 Length=365 Score = 75.2 bits (82), Expect = 2e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCG 250 ||||| |||||||| |||||| | || |||| ||| ||| ||| ||| |||||||| Sbjct 81 CCTACGTACCCTTTACGCCCAATCCTTACGAATAATGCTCGCCCCCTCCGTTTTACCGCG 22 Query 251 GCTGCTGGCACGTAGTTAGCC 271 |||||||||||| | |||||| Sbjct 21 GCTGCTGGCACGAAATTAGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828737582554