Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq1407 123 2e-26 seq2 114 9e-24 seq1569 93.3 3e-17 >seq1407 Length=3311 Score = 123 bits (136), Expect = 2e-26 Identities = 107/130 (82%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 10 TCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCAT 69 |||||||||||||||||||||||| || | |||||||||||||| ||||| |||||| | Sbjct 2595 TCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTAC 2536 Query 70 CTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTATCACTAC-GA 128 |||||| | ||| ||||||| |||||| | |||||||| || ||| | || || || Sbjct 2535 CTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCT-ACGACCGA 2477 Query 129 TTTCCGACCG 138 |||||||||| Sbjct 2476 TTTCCGACCG 2467 >seq2 Length=124989 Score = 114 bits (126), Expect = 9e-24 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | ||||||||||||||| || Sbjct 3317 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGTGGAACCACCGGATCACTATATCCAT 3376 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | ||||| |||| || |||||||| ||| ||| |||||||| Sbjct 3377 CTTTCGATCCTGCTCGACTTGTTAGTCTCACAGTCAAGCACCCTTATGCTATTGCACT 3434 >seq1569 Length=2469 Score = 93.3 bits (102), Expect = 3e-17 Identities = 101/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 14 TTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGC 73 |||||||||||||||||||| || | ||||||||||||||| || |||||| |||| Sbjct 718 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGC 777 Query 74 TCTAGTTGT-TGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-ATCACTACGATTT 131 || |||| ||| ||| || ||||||| ||| ||| |||||||| ||| |||| || Sbjct 778 TCGGCTTGTCTGC-CTCACAGTCAAGCAAGCTTATGCTATTGCACTCCTCA-TACGGTTA 835 Query 132 CCGACCGTA 140 || | |||| Sbjct 836 CCAAGCGTA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351974345800