Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq1407 129 6e-28 seq1569 120 3e-25 seq2 104 2e-20 >seq1407 Length=3311 Score = 129 bits (142), Expect = 6e-28 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 2592 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 2533 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| |||||||||||||| |||| |||| || ||| | |||| || Sbjct 2532 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACCGATTTC 2473 Query 144 CGACCG 149 |||||| Sbjct 2472 CGACCG 2467 >seq1569 Length=2469 Score = 120 bits (132), Expect = 3e-25 Identities = 122/157 (78%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| || |||||| ||||| Sbjct 718 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGC 777 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTC--ACGATGT 142 ||| ||| ||| ||||||||| ||||||||| |||||||| |||| ||| | Sbjct 778 TCGGCTTGTCTGCCTCACAGTCAAGCAAGCTTATGCTATTGCACT--CCTCATACGGTTA 835 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || | ||| | |||| ||||| | ||||||||| Sbjct 836 CCAAGCGTATTGAGCTTACCTTTGAAAGCCTCCGTTA 872 >seq2 Length=124989 Score = 104 bits (114), Expect = 2e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||| || |||||| ||||| Sbjct 3330 TTGAGCGATGGCCCTTCCATGTGGAACCACCGGATCACTATATCCATCTTTCGATCCTGC 3389 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| || | |||| ||||||||| ||||||| |||||||| Sbjct 3390 TCGACTTGTTAGTCTCACAGTCAAGCACCCTTATGCTATTGCACT 3434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473564332888