Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001951.1 Length=416 Score E Sequences producing significant alignments: (Bits) Value seq3529 342 1e-91 seq1649 183 7e-44 seq2543 127 5e-27 >seq3529 Length=3170 Score = 342 bits (378), Expect = 1e-91 Identities = 233/262 (89%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 155 TTCCAGTGCCGTGGAGCTGTTGCAGCTGTGCAAGACCCACAACCTGCGCGTTGCCGAACT 214 ||||||||| ||||| ||| ||||||||||||||||||||||||||||||| || || || Sbjct 3170 TTCCAGTGCGGTGGAACTGCTGCAGCTGTGCAAGACCCACAACCTGCGCGTCGCTGAGCT 3111 Query 215 GATGCTGGCGAATGAAAAAACCTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAA 274 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3110 GATGTTGGCGAATGAAAAAACCTGGCGCTCGGAAGAAGAAATCCGCAGCGGCCTGATGAA 3051 Query 275 ACTCTGGCGCGCCATGCAGGATTGCGTGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCC 334 || ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || Sbjct 3050 GCTTTGGCGCGCCATGCAGGATTGCGTGGAGCAAGGCCTAAAGCACGAAGGCATCCTTCC 2991 Query 335 CGGCGGCTTGAACGTGCGCCGTCGCGCTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAA 394 ||||||| | || || || || || || |||||||| ||||||||||||||||||||| Sbjct 2990 CGGCGGCCTTAATGTACGGCGCCGTGCAGCCAAGTTGCACCGCAGCTTGCAGGAGCTGGG 2931 Query 395 CAAGCCCAATGTGATCGGCTCG 416 |||||| || |||||||||||| Sbjct 2930 CAAGCCGAACGTGATCGGCTCG 2909 >seq1649 Length=7214 Score = 183 bits (202), Expect = 7e-44 Identities = 294/418 (70%), Gaps = 6/418 (1%) Strand=Plus/Plus Query 2 CCATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCG-ACA 60 ||| |||||||||||| ||| | | | |||||||||||| | || | || | | | Sbjct 5798 CCACCCCAACGCCATGTCCCTGCATGCCTACGGCGAAAACGGCCCGTTG-AGCGAGCAAA 5856 Query 61 CCTATTACTCGGTGGGTGGCGGTTTCGTGGTGGATGAAGCCCAGGCCCAAAGCGGTGTGG 120 | || ||||||||||| ||||||||| | | || | || | ||| | |||| | | Sbjct 5857 CGTACTACTCGGTGGGCGGCGGTTTCATCATCGAAGCGGCAGAAGCCGAGTCCGGTATCG 5916 Query 121 CG--GACATGGACCGTACCGAGCTGCCCTATGATTTTTCCAGTGCCGTGGAGCTGTTGCA 178 || ||| | || | | ||||||| || ||||| || ||||| || ||| || Sbjct 5917 CGCCGACCAGCGAAGTGC--AATTGCCCTACGACTTTTCGAGCGCCGTCGAACTGCTGGC 5974 Query 179 GCTGTGCAAGACCCACAACCTGCGCGTTGCCGAACTGATGCTGGCGAATGAAAAAACCTG 238 ||||||| | ||| |||||| ||| |||| |||||| |||| || || |||| Sbjct 5975 CTTGTGCAACAAGCACGGCCTGCGGGTTTCCGAGCTGATGATGGCCAACGAGCGGGCCTG 6034 Query 239 GCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATTG 298 ||||||||| | || ||||||||||||||| || | ||||| | |||| || || Sbjct 6035 GCGCAGCGATGCCGAGATCCGCAGCGGCCTGCTGCATATCTGGTCGGTGATGCGTGAATG 6094 Query 299 CGTGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCGTCG 358 ||| || || ||||| |||||||| |||||||||||||| || | |||| || || Sbjct 6095 CGTCGAACAAGGCCTGCGCCACGAAGGCATCCTGCCCGGCGGTCTGGATGTGCCACGGCG 6154 Query 359 CGCTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAACAAGCCCAATGTGATCGGCTCG 416 ||| || || || ||||||||| ||| ||| | ||| ||||| || ||| |||| Sbjct 6155 CGCGGCGAAATTGCACCGCAGCCTGCTGGAAATCGGCAAACCCAACGTTATCACCTCG 6212 >seq2543 Length=3861 Score = 127 bits (140), Expect = 5e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 1 TCCATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCGACA 60 |||| || || |||||||||| ||||||||| || || |||||||||||||||||||||| Sbjct 95 TCCACCCTAATGCCATGACCCTGGTGGTGTTCGGTGATAACGGCGAGCTGCACCGCGACA 36 Query 61 CCTATTACTCGGTGGGTGGCGGTTTCGTGGTGGAT 95 |||| ||||||||||| ||||| |||||||||||| Sbjct 35 CCTACTACTCGGTGGGCGGCGGATTCGTGGTGGAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1228704473088