Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2 307 2e-81 seq1569 226 4e-57 seq1755 167 4e-39 seq1407 143 4e-32 seq6 111 2e-22 >seq2 Length=124989 Score = 307 bits (340), Expect = 2e-81 Identities = 234/275 (85%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTC-CAAACTTAGCTTCCCA 60 |||| | | |||| |||| |||| |||||| |||||| ||| ||||| ||||| | || Sbjct 2981 GAGGCGAGTTTCGTACTTATATGCTTTCAGCACTTATCTCTTAACAAACATAGCTACTCA 3040 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 || ||||| || | ||||||| | ||||||||||||| ||| |||||||| ||||| Sbjct 3041 GCGATGCAACTGACGTCACAACTGATACACCAGAGGTTTGCCCAATCCGGTCCTTTCGTA 3100 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||| |||||||||||||||||| |||||||| | ||||| |||| ||||||||| Sbjct 3101 CTAAGATCAGCTCCTCTCAAATTTCTAACGCCCACAGCAGATAGAGACCAAACTGTCTCA 3160 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3161 CGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGAC 3220 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || ||||||||||||| ||||||||||||||| Sbjct 3221 CTTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 3255 >seq1569 Length=2469 Score = 226 bits (250), Expect = 4e-57 Identities = 173/205 (84%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| ||||||||| |||||| |||||| |||| | | ||||| | | || |||| | Sbjct 392 TTCGCACTTAGATGCTTTCAGCGCTTATCTATTCCCAGCGTAGCTACTCTGCAATGCCCC 451 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| | ||||| | | ||| ||||| | ||||| ||||||||||||||||||||| ||| Sbjct 452 TGGCGGAACAACAGATTCACTAGAGGCTAGTCCAACCCGGTCCTCTCGTACTAAGGTCAG 511 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | || |||||| ||||||||||||| || |||||||||||||||||||| |||||||||| Sbjct 512 CCCCACTCAAAATTCCTACGCCCACAACAGATAGGGACCGAACTGTCTCACGACGTTCTG 571 Query 191 AACCCAGCTCGCGTGCCTCTTTAAT 215 ||||||||||||||||| ||||||| Sbjct 572 AACCCAGCTCGCGTGCCACTTTAAT 596 >seq1755 Length=4651 Score = 167 bits (184), Expect = 4e-39 Identities = 140/172 (81%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| ||| ||| ||||||||||||||||| ||||||| ||| | ||||| ||| || Sbjct 707 AGGTGGGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTATATAGCTACCCTGC 766 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 ||||| |||| ||||| ||| |||||||| | ||||||||||||||||||||||| Sbjct 767 TATGCGGCTGGCGCCACAACAGGTCCACCAGAGATACGTCCATCCCGGTCCTCTCGTACT 826 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACT 174 | |||||| |||| |||| ||||||| |||||| | ||||||||||||||| Sbjct 827 AGGGACAGATCCTGTCAATATTCCTACACCCACGGCAGATAGGGACCGAACT 878 >seq1407 Length=3311 Score = 143 bits (158), Expect = 4e-32 Identities = 127/159 (80%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| |||| ||| ||||| ||| || |||| |||| Sbjct 2910 GCTTAGATGCTTTCAGCGGTTATCTATTCCGAACATAGCTACCCGGCAATGCCACTGGCG 2851 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| || ||||||||||| ||||| ||||||||||||||||| | |||| ||| Sbjct 2850 TGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCT 2791 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACT 174 ||||||| || ||| ||||| | ||||||||||||||| Sbjct 2790 CTCAAATCTCAAACGTCCACGGCAGATAGGGACCGAACT 2752 >seq6 Length=53452 Score = 111 bits (122), Expect = 2e-22 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||||||||||||||||| |||||||||||||||||||| || || ||||||| Sbjct 8947 GATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCATGTACCGTTTTAATGACT 8888 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| |||||||||| | ||| |||| | |||||| || ||||||||||| Sbjct 8887 GAACACGTCAACCCTTGGAAACTATTTCAACTCCAGGACACGATAAGCCGACATCG 8832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780741197464