Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq3138 455 5e-126 seq186 95.1 2e-17 >seq3138 Length=3179 Score = 455 bits (504), Expect = 5e-126 Identities = 278/294 (95%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60 ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 2077 TCGAGCAACGCCAATAGACCGCAAACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 2018 Query 61 AGCGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATT 120 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2017 AGTGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTT-GTGGAATT 1959 Query 121 TCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTG 180 |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1958 TCCACGTTACCCACTTGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCGAGCAGCTTG 1899 Query 181 CGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTG 240 ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1898 CGCTTACGGCTGACGTCGCCGCCATAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTG 1839 Query 241 ACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1838 ACGGAAGTCCGTGCAATGATCTGCCCGCCGATGGCGGCCTGGATCGCGACGTCG 1785 >seq186 Length=278989 Score = 95.1 bits (104), Expect = 2e-17 Identities = 135/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 101 GAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCT 160 ||||||||| | | || ||||| || ||||| | || |||||| || || || ||| Sbjct 190067 GAAGGCTTCCT-GCGGGATTTCGACCTTGCCGAACTGCCGCATGCGCTTCTTGCCTTCCT 190009 Query 161 TTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTA 220 | ||||| || || ||||||||||| || ||||| ||||| |||||||| ||| | Sbjct 190008 TCTGCTTTTCCAGAAGCTTGCGCTTGCGCGAGACGTCGCCGCCATAGCATTTTGCCGTCA 189949 Query 221 CGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCT 280 ||| ||| | || ||| || || ||||| || | | ||||| ||||| |||| Sbjct 189948 CGTCCTTGCGCAGGGCCGAGATGGTTTCACGCGCGATCACCGTGCCGCCGATGGCCGCCT 189889 Query 281 GGATCGCGA 289 |||||| || Sbjct 189888 GGATCGGGA 189880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838334822784