Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq1302 354 2e-95 seq6955 324 3e-86 seq1221 91.5 3e-16 >seq1302 Length=9113 Score = 354 bits (392), Expect = 2e-95 Identities = 308/381 (81%), Gaps = 1/381 (0%) Strand=Plus/Plus Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62 || || |||||||||| || ||||||||| | ||| ||| ||||| |||| | Sbjct 1493 AGGGCGAAGAAGTGCAGCAGGCGTTCGGCGTGCAGTTCACCGTGGCGCTCGCGGTAATCG 1552 Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122 || ||||||||| || | |||| || |||||||||||||| ||||||||||| ||||||| Sbjct 1553 TCGAGGGTGCCGGTGATCAGCAGCGGCATCGCCAGTTCATGCAGGCCATCGCCGCGCCCG 1612 Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 |||||||||||| |||| |||||||||||| || ||||| || || ||||| || ||| Sbjct 1613 TCCTGGGGCATCAGCGACAGCGAATAACTGACATCGAGCATCCGCGCGAGGTTTTCCGCG 1672 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATA-CTCAG 241 ||||||||||| |||||||||||||||| ||| | || ||||||| || |||| ||| Sbjct 1673 CGCTCCAGGTAGCGCGACATCCAATACAAATCCGAGGCAGTTCTACTCAACATATTTCAA 1732 Query 242 CCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAG 301 |||| |||||||||||||| || || || ||||| || ||||||||||| ||||||||| Sbjct 1733 TCCTCGACCACCCAGGTGTCTTTAGTGCCGCCGCCCTGGGACGAGTTGACCACCAGCGAG 1792 Query 302 CCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAG 361 |||||| ||||||||| || |||| ||| |||||||||| |||||||||||||| Sbjct 1793 CCTTCCCGCAGCGCCACACGAGTCAGGCCGCCGGGCACCACACGGGTTTCCTTGCCTTGC 1852 Query 362 AGCACGAAGGGTCGCAAGTCG 382 ||||| || || |||| |||| Sbjct 1853 AGCACAAACGGGCGCAGGTCG 1873 >seq6955 Length=851 Score = 324 bits (358), Expect = 3e-86 Identities = 221/249 (89%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 1 CGAGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGC 60 |||| || |||||||||| |||||| ||||| ||||| ||| || ||||| ||||| | Sbjct 603 CGAGGGCGAAGAAGTGCAGCATGCGCTCGGCGTCCAGTTGCTGATGGCGCTCAAGGTAAC 662 Query 61 TGTCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCC 120 |||||||||||||||||||||||| |||||| |||| || ||||| || || ||||||| Sbjct 663 TGTCCAGGGTGCCGCTGCTGAGCAGCGACATGGCCAACTCGTCCAGCCCGTCACTGCGCC 722 Query 121 CGGCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGG 180 |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| Sbjct 723 CGGCCTGGGGCATCAACGACAGCGAATAACTGACTTCCAGCATGCGCGCCAGGTTCTCGG 782 Query 181 CGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATACTCA 240 | |||||||||||||| |||||||||||||||||||| || ||||||| ||||||||||| Sbjct 783 CACGCTCCAGGTAACGGGACATCCAATACAGATCTGCGGCGGTTCTACTCAGCATACTCA 842 Query 241 GCCCTCCAC 249 ||||||||| Sbjct 843 GCCCTCCAC 851 >seq1221 Length=50311 Score = 91.5 bits (100), Expect = 3e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 238 TCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAG 297 |||| | || | |||||||||||||| || || || || || || ||||| || || Sbjct 22790 TCAGTCGTCGAGAACCCAGGTGTCCTTTGTCCCGCCTCCCTGGCTGGAATTGACAACGAG 22731 Query 298 CGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGC 337 ||||||||||||||||||||||||||||| ||| || ||| Sbjct 22730 CGAGCCTTCCTTCAGCGCCACGCGGGTCAGGCCGCCCGGC 22691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119912931200