Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq606 286 8e-75 seq204 223 8e-56 seq54 210 5e-52 seq2442 170 5e-40 seq6 89.7 1e-15 >seq606 Length=289815 Score = 286 bits (316), Expect = 8e-75 Identities = 188/208 (90%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 496 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 555 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 556 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 615 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| ||| |||| ||||||| || Sbjct 616 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCACC 675 Query 184 AACTAGCTAATCCCATCTGGGTTCATCC 211 ||||||||||||| | ||| |||||| Sbjct 676 AACTAGCTAATCCAACGCGGGCTCATCC 703 >seq204 Length=6015 Score = 223 bits (246), Expect = 8e-56 Identities = 199/242 (82%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 174 TTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTC 233 ||||||| ||||||||||||||| | || || ||||| ||||| | ||||||||||||| Sbjct 5498 TTACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTC 5439 Query 234 CCCCTCTTTGGTCT-TGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292 ||| |||| | | ||||| ||||||||||||| |||||||| | ||||||||| Sbjct 5438 CCCTGCTTTCTCCCGTAGGACGT-ATGCGGTATTAGCGTCCGTTTCCGGACGTTATCCCC 5380 Query 293 CTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCA 352 | | | ||||||| |||| || ||||||||||||||||||| ||| ||| || |||| Sbjct 5379 CACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA--AGAGAAGCA 5323 Query 353 AGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTG 412 |||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 5322 AGCTTCT--CT-CTACCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTG 5266 Query 413 AG 414 || Sbjct 5265 AG 5264 Score = 73.4 bits (80), Expect = 1e-10 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGC 53 || |||||||| |||||| ||||||||| |||||||||||||||| ||||||| Sbjct 5668 GTGCTTTACAATCCGAAGACCTTCTTCACACACGCGGCATGGCTGGATCAGGC 5616 >seq54 Length=99412 Score = 210 bits (232), Expect = 5e-52 Identities = 162/191 (85%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| || ||||||| || | ||||||||||||||| |||||||||||||||| Sbjct 14012 TTTACAACCCAGAGGGCCTTCATCCTGCACGCGGCATGGCTGGTTCAGGCTTGCGCCCAT 14071 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || |||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||| Sbjct 14072 TGACCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAGTG 14131 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | |||||||||| | ||| |||||||||| |||| ||||||||| | || Sbjct 14132 TGGGGGACTTTCCTCTCAGAACCCCTACCCATCGTCGCCTTGGTGAGCCATTACCTCACC 14191 Query 184 AACTAGCTAAT 194 ||||||||||| Sbjct 14192 AACTAGCTAAT 14202 >seq2442 Length=2623 Score = 170 bits (188), Expect = 5e-40 Identities = 248/346 (72%), Gaps = 27/346 (8%) Strand=Plus/Plus Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| Sbjct 403 TGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTC 462 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT------ 194 ||| | |||| |||||||||| |||||||| ||||||||||||||||||||| Sbjct 463 AGATCCCCTAGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACG 522 Query 195 ----CCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGG-TCCCCCTCTTTGGTCTTG 249 |||||| || |||| ||| | | | || | || || || Sbjct 523 CATGCCCATC----TTAATCCTATAAATATTTGAACATTGGATAATGCT-----ATCCTG 573 Query 250 CGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA-GTTT 308 | ||||||||| ||| | |||| || ||||||||| | ||| | ||| Sbjct 574 TGTTTTTATGCGGTCTTAATCCGAATTTCTTCGGGCTATCCCCCTGATTAAGGTAGGTTG 633 Query 309 CCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTAC 368 | | | |||| ||||||| ||||||| ||| ||| ||||||| ||| | | Sbjct 634 CATACGCGTTACGCACCCGTGCGCCACT-TTCA--TAAGAAGCAAGCCTCTTAATCT--- 687 Query 369 CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||| ||||||||||||| |||||||| ||||| Sbjct 688 CGTTCGACTTGCATGTATTAGGCCTGCCGCTAGCGTTCATCCTGAG 733 >seq6 Length=53452 Score = 89.7 bits (98), Expect = 1e-15 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||| || || |||| ||| ||| || ||||| ||||||||| ||||||||||| Sbjct 52431 CACGTGGTATCGCTGGATCTAACTTACGTTAATTGTCCAATATTCCTCACTGCTGCCT-- 52374 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 | | |||| ||| | | | ||| ||||| ||||| || ||||| || ||||||| ||| Sbjct 52373 CTTTCGAGTTTGGCCTTTTTTTCAATTCCAATGTGGATGATCATCTTCCCAGACCACCTA 52314 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 | ||| ||| || | | | |||||||| |||||| Sbjct 52313 CGAATCTTCGGCTTGATAAGACATTACCCTATCAACTA 52276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222304970624