Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq606 389 1e-105 seq54 309 9e-82 seq6 168 2e-39 seq5871 165 2e-38 seq2442 129 2e-27 seq6876 93.3 1e-16 >seq606 Length=289815 Score = 389 bits (430), Expect = 1e-105 Identities = 376/480 (78%), Gaps = 20/480 (4%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGA-TAACATAC 80 ||||||| ||||||||||||||||||||| || || ||| | ||||| |||| | Sbjct 815 GAGCGGCAGACGGGTGAGTAACGCGTGGG-AATCTACCCATCTCT-ACGGAATAACGCAT 758 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140 |||| || ||||||||| ||||| | ||| | ||| |||| || | Sbjct 757 GGAAACGTGTGCTAATACCG-----TATACGTCCTTCGGGAGAAAGATTTATCGGAGAT- 704 Query 141 CGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 200 |||| ||||||| ||||||||||||||| ||||| ||| ||||||| Sbjct 703 ----------GGATGAGCCCGCGTTGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAG 654 Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260 ||||||||| |||| | |||||||| ||||| |||||| ||| |||||||||||| || Sbjct 653 GCGACGATCCATAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCC 594 Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320 | |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 593 AGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGC 534 Query 321 AACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAAT 380 | |||||||||| |||||||||| | |||| |||||||||| || | ||||||||| Sbjct 533 CATGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTCACCGGTGAAGATAAT 474 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 ||||||| | || |||||||||||||||| |||||||||||||||||||||||| || Sbjct 473 GACGGTAACCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAG 414 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||||| | |||| ||||| |||||||||| | |||||| || | ||||||| Sbjct 413 GGGGCTAGCGTTGTTCGGATTTACT-GGGCGTAAAGCGCACGTAGGCGGACTATTAAGTC 355 >seq54 Length=99412 Score = 309 bits (342), Expect = 9e-82 Identities = 369/501 (74%), Gaps = 25/501 (5%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 || ||||||||||||| ||||| ||| |||| || || ||||| | ||| | | Sbjct 14348 GACCGGCGGACGGGTGCGTAACACGTATGTAATCTACCTTGTACTGGAGCATAGCTCTCG 14289 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCC 141 |||| | |||||| ||| ||| | ||| | |||| || || |||||||| Sbjct 14288 GAAACGAGAATTAATACTCCATATTATCCCATTAACACATGTTATTGAGATGAAAGCTCC 14229 Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201 ||||||||| ||| | | ||||| |||||||||||||| |||||| |||| ||||||| Sbjct 14228 GGCGGTACAAGATGGGCATGCGTCCCATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGG 14169 Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA 261 ||||||| |||| | |||||||| || ||||| ||| ||||||| |||| ||| Sbjct 14168 CGACGATGGGTAGGGGTTCTGAGAGGAAAGTCCCCCACACTGGCACTGAGATACGGGCCA 14109 Query 262 AACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCA 321 ||||||||||||||||||||| |||||||||| |||||||| |||||||| |||| Sbjct 14108 GACTCCTACGGGAGGCAGCAGTAGGGAATATTGGTCAATGGGCGCAAGCCTGAACCAGCC 14049 Query 322 ACGCCGCGTGAGCGATGAAGGCCTTC-GGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA- 379 | |||||||| |||||||||| || |||| ||||| || | | | |||| |||| Sbjct 14048 ATGCCGCGTGCAGGATGAAGGCCCTCTGGGTTGTAAACTGCTTTTAT-ATGGAA-ATAAA 13991 Query 380 --------------------TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419 ||| ||||| | || |||| |||||||||| |||||| Sbjct 13990 AAAACCCTTGCGAGGGTTCTTGAAGGTACCATAAGAATAAGCACCGGCTAACTCCGTGCC 13931 Query 420 AGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGT 479 |||||||||||||||||| |||| || ||||||||||||| ||| | ||| |||||||| Sbjct 13930 AGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGT 13872 Query 480 GCGTAGGTGGTTTCTTAAGTC 500 ||||||| || || ||||||| Sbjct 13871 GCGTAGGCGGCTTTTTAAGTC 13851 >seq6 Length=53452 Score = 168 bits (186), Expect = 2e-39 Identities = 236/328 (72%), Gaps = 15/328 (5%) Strand=Plus/Plus Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233 |||||| || ||||| | |||| |||| ||| ||| |||| | ||| || | ||||| Sbjct 52276 TAGTTGATAGGGTAATGTCTTATCAAGCCGAAGATTCGTAGGTGGTCTGGGAAGATGATC 52335 Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 ||||||||||| ||| | | | |||||||| | | ||||||||||| |||||||| Sbjct 52336 ATCCACATTGGAATTGAAAAAAAGGCCAAACTCGAAAG--AGGCAGCAGTGAGGAATATT 52393 Query 294 GCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGT-- 351 | ||||| | ||| ||| |||| | || |||||| || ||| | || Sbjct 52394 GGACAATTAACGTAAGTTAGATCCAGCGATACCACGTGAGGGA---AGG-----GAGTAA 52445 Query 352 --CGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTA 409 |||||| |||| | |||||||| || ||| |||| | |||||||||||| Sbjct 52446 AACGTAAACCTCTTTTGATAAGGAAGAAAAAGACAAAACTTATAAAAAAAGCCCCGGCTA 52505 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGG 469 | | |||||||||||||||||||| ||| ||||||| ||| |||| || | | | ||| Sbjct 52506 ATTTCGTGCCAGCAGCCGCGGTAAAACGGAGGGGGCAAGCATTATTCGTTAGGA-TTGGG 52564 Query 470 CGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||||||||| ||||| ||| |||||| Sbjct 52565 CGTAAAGGGTAAGTAGGCGGTCTCTTAA 52592 >seq5871 Length=500 Score = 165 bits (182), Expect = 2e-38 Identities = 214/293 (73%), Gaps = 7/293 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| ||||||| ||||| |||||||||| | ||| |||| | ||||| Sbjct 293 ATTAGGCAGTTGGTGGGGTAAAGGCTTACCAAACCTGAGATTCGTAGGTGGTTCGAGAGA 234 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| ||||||||| | ||| | | | |||||||| | | |||| ||||| || Sbjct 233 ATGATCATCCACATTGGTATTGAAAGAACGACCAAACTCTGAAG--AGGCTGCAGTAAGG 176 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||||||| |||||| || |||| |||| |||| || | | ||||| || |||| | Sbjct 175 AATATTGGACAATGAGCGCAAGCTTGATCCAGCTACACTGAGTGAGGGAAGAAG----TA 120 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGC 407 | |||||| |||| | ||||||||||||||| | || | || |||| |||||| Sbjct 119 AAG-CGTAAACCTCTTTTAATAAGGAAGATAATGACAAAAATTAAAGAAGAAGTCCCGGC 61 Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAA 460 ||| | ||||||||| |||||||||||||| ||||||| ||| |||| || || Sbjct 60 TAATTTCGTGCCAGCCGCCGCGGTAATACGGAGGGGGCAAGCATTATTCGTAA 8 >seq2442 Length=2623 Score = 129 bits (142), Expect = 2e-27 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| | ||||||||||||| ||||||||| |||||||||||||| | ||| || | Sbjct 523 GCGTGTCATTAGCTAGTTGGCGGGGTAACGGCCCACCAAGGCGACGATGACTAGGGGATC 464 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||| | ||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 463 TGAGAGGATGACCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 404 Query 281 A 281 | Sbjct 403 A 403 >seq6876 Length=365 Score = 93.3 bits (102), Expect = 1e-16 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 |||||| | |||||||||||||||||||| ||| ||||||| ||| |||| || || | Sbjct 1 GGCTAATTTCGTGCCAGCAGCCGCGGTAAAACGGAGGGGGCGAGCATTATTCGTAAGGA- 59 Query 465 TGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 | ||||||||||||| ||||||| |||| Sbjct 60 TTGGGCGTAAAGGGTACGTAGGTTGTTT 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497483576576