Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq606 403 4e-110 seq54 342 1e-91 seq2108 145 2e-32 seq204 138 3e-30 seq2442 123 6e-26 seq6 107 5e-21 seq6876 98.7 2e-18 seq5871 77.0 8e-12 >seq606 Length=289815 Score = 403 bits (446), Expect = 4e-110 Identities = 330/400 (83%), Gaps = 1/400 (0%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 460 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 401 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||| ||||||||||||||| | |||||| || | ||||||||| ||||||| | Sbjct 400 TTCGGATTTACTGGGCGTAAAGCGCACGTAGGCGGACTATTAAGTCAGGGGTGAAATCCC 341 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||||||| ||||| ||||| |||| | || |||| | ||| || |||| Sbjct 340 GGGGCTCAACCCCGGAACTGCCTTTGATACTGGTAGTCTTGAGTTCGAGAGAGGTGAGTG 281 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 280 GAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCG 221 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 ||| |||| | |||||| |||||| |||||||||||||||||||||||||||||| Sbjct 220 GCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 161 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 |||||||||||||||||||||||||||| ||||| || ||| | | || || Sbjct 160 ACCCTGGTAGTCCACGCCGTAAACGATGTCAACTAGCCGTTGGGAGCCTTGAGCTCT-TA 102 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||| |||||| ||||| || ||||||||||| Sbjct 101 GTGGCGCAGCTAACGCATTAAGTTGACCGCCTGGGGAGTA 62 >seq54 Length=99412 Score = 342 bits (378), Expect = 1e-91 Identities = 316/398 (79%), Gaps = 8/398 (2%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||||||| Sbjct 13952 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCG 13893 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| ||||||||||||||| || || ||||||||| ||||||| ||| | Sbjct 13892 GATTTATTGGGTTTAAAGGGTGCGTAGGCGGCTTTTTAAGTCAGTGGTGAAATCCTAGTG 13833 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| | | ||| ||||||||| || ||| |||| ||||| || ||| |||| Sbjct 13832 CTTAACATTAGAAATGCCATTGAAACTGGAGAGCTTGAGTCAAGGAGAGGTAAGCAGAAT 13773 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||||||| ||||||||| |||||| | ||||| |||| | |||||||| |||| Sbjct 13772 TTATGGTGTAGCAGTGAAATGCTTAGATACCATAAGGAATACCAATAGCGAAGGCAGCTT 13713 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| || |||||| ||||||| ||||||||||||||||||||||||||||| |||| Sbjct 13712 ACTGGCCTTGTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGAGACCC 13653 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA-AGTGCTCCG-GT 370 ||||||||||||| ||||||||||| |||| | | | |||| || | | || Sbjct 13652 TGGTAGTCCACGCTGTAAACGATGATTACTCGATAT------ACATACTTTGATATGTGT 13599 Query 371 GCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| || ||| |||||| ||||||||||||||| Sbjct 13598 GTCTGAGCGAAAGCATTAAGTAATCCACCTGGGGAGTA 13561 >seq2108 Length=210 Score = 145 bits (160), Expect = 2e-32 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 76 TTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTC 135 ||||||||||||||| | |||||||||| |||||||| | |||||| | ||| Sbjct 210 TTACTGGGCGTAAAGCGCGCGTAGGTGGCCAATTAAGTCAAATGTGAAATCCCCGAGCTT 151 Query 136 AACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCC 195 ||| || | ||| || || |||| ||||||||| |||| || || ||||||| Sbjct 150 AACTTGGGAATTGCATTCGATACTGGTTGGCTAGAGTATGGGAGAGGATGGTAGAATTCC 91 Query 196 TAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCT 255 |||||||||||||||||||||| || ||||||| ||| |||||||||| || || Sbjct 90 AGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGATGGCGAAGGCAGCCATCT 31 Query 256 GGACTGTAACTGACACTGAGGCTCGAAAGC 285 || || ||||||||||||| ||||||| Sbjct 30 GGCCTAATACTGACACTGAGGTGCGAAAGC 1 >seq204 Length=6015 Score = 138 bits (152), Expect = 3e-30 Identities = 123/154 (80%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 131 GGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGA 190 ||||||||| || ||||| || |||||| | |||||||| | || || ||||| Sbjct 5862 GGCTCAACCTGGGAACTGCATTCAAAACTGACGAGCTAGAGTATGGTAGAGGGTGGTGGA 5921 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 ||| | ||||||||||||||||||||||||| | |||||||||||||||||||||| | Sbjct 5922 ATTTCCTGTGTAGCGGTGAAATGCGTAGATATAGGAAGGAACACCAGTGGCGAAGGCGAC 5981 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAG 284 |||||||| ||||||||||||| |||||| Sbjct 5982 CACCTGGACTGATACTGACACTGAGGTGCGAAAG 6015 >seq2442 Length=2623 Score = 123 bits (136), Expect = 6e-26 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 86 TAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGA 145 ||||||||||||||| || || ||||||||| |||||||| | |||||||||| | | Sbjct 203 TAAAGGGTGCGTAGGCGGCTTATTAAGTCAGGGGTGAAAGACGGTGGCTCAACCATCGCA 144 Query 146 CTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCG 205 ||| |||| |||| | ||| || | || || || | | ||||| |||||| Sbjct 143 GTGCCCTTGATACTGATGAGCTTGAATACACTAGAGGTAGGCGGAATGTGACAAGTAGCG 84 Query 206 GTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAAC 265 ||||||||| ||||||| ||||||| | |||||||| |||| || ||| | Sbjct 83 GTGAAATGCATAGATATGTCACAGAACACCGATTGCGAAGGCAGCTTACTATGGTGTTAT 24 Query 266 TGACACTGAGGCTCGAAAGCGTG 288 |||| ||||||| |||||||||| Sbjct 23 TGACGCTGAGGCACGAAAGCGTG 1 >seq6 Length=53452 Score = 107 bits (118), Expect = 5e-21 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 ||||||||||||| | |||||||||||||||||||| ||| ||||||| ||| |||| || Sbjct 52494 AAGCCCCGGCTAATTTCGTGCCAGCAGCCGCGGTAAAACGGAGGGGGCAAGCATTATTCG 52553 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 111 | | |||||||||||||| ||||| ||| |||||| Sbjct 52554 TTAGGATTGGGCGTAAAGGGTAAGTAGGCGGTCTCTTAA 52592 Score = 82.4 bits (90), Expect = 2e-13 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 263 AACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCA 322 ||||||| |||||| |||| | | ||||||||||||||||||| |||||||||||| | Sbjct 52748 AACTGACGCTGAGGTACGAAGGTATAGGGAGCAAACAGGATTAGAGACCCTGGTAGTCTA 52807 Query 323 CGCCGTAAACGATGA 337 | ||||||||||| Sbjct 52808 TACTGTAAACGATGA 52822 >seq6876 Length=365 Score = 98.7 bits (108), Expect = 2e-18 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79 |||||| | |||||||||||||||||||| ||| ||||||| ||| |||| || || | Sbjct 1 GGCTAATTTCGTGCCAGCAGCCGCGGTAAAACGGAGGGGGCGAGCATTATTCGTAAGGAT 60 Query 80 TGGGCGTAAAGGGTGCGTAGGTGGTTT 106 |||||||||||||| ||||||| |||| Sbjct 61 TGGGCGTAAAGGGTACGTAGGTTGTTT 87 Score = 96.9 bits (106), Expect = 8e-18 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 265 CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACG 324 |||||||||||| |||| || | |||||||||||||||||||||||||||||||| | | Sbjct 247 CTGACACTGAGGTACGAAGGCATAGGGAGCAAACAGGATTAGATACCCTGGTAGTCTATG 306 Query 325 CCGTAAACGATGAATA 340 | ||||||||||| || Sbjct 307 CAGTAAACGATGAGTA 322 >seq5871 Length=500 Score = 77.0 bits (84), Expect = 8e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||| ||||||||| | ||||||||| |||||||||||||| ||||||| ||| ||| Sbjct 74 GAAGAAGTCCCGGCTAATTTCGTGCCAGCCGCCGCGGTAATACGGAGGGGGCAAGCATTA 15 Query 69 TCCGGAA 75 | || || Sbjct 14 TTCGTAA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203106463232