Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq116 172 1e-40 seq5906 161 2e-37 >seq116 Length=14452 Score = 172 bits (190), Expect = 1e-40 Identities = 197/260 (76%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||||| | || |||||| | |||||| |||||||||||||||||||| Sbjct 8762 CTTCTTAGAGGGACTACCTGCCTCAAGCAGGCGGAAGTCCGAGGCAATAACAGGTCTGTG 8703 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACA-GAGCCAACGAGTTCATC 189 |||||||||||| |||||||||||||||||||| || | | || || ||| Sbjct 8702 ATGCCCTTAGATACCTTGGGCCGCACGCGCGCTACATTGCGATGCGCAAAAAGGTT---- 8647 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCAT 248 ||| | |||||||| ||||||||| | || || | ||| ||||| || | | Sbjct 8646 GCCTGGTCCGGAAGGATTGGGTAATCAGG---AATTCATCACGTAACAGGGATTGATCTT 8590 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || |||||| | || |||||||||||| ||| ||||||| ||||| | | || ||| Sbjct 8589 TGTAATTATCGATCATCAACGAGGAATTCCTTGTAAGCGTAAGTCATTACCTTACGCTGA 8530 Query 309 TTACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 8529 ATATGTCCCTGCCCTTTGTA 8510 >seq5906 Length=214 Score = 161 bits (178), Expect = 2e-37 Identities = 164/210 (78%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 120 ACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAA 179 ||||||||||||||||||||||||| | |||| |||||||||||||||||| | || || Sbjct 214 ACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGATAAAGTCAG 155 Query 180 CGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGG 239 || | | | |||| || ||| | ||||| | || || | ||||||| | ||| Sbjct 154 CGTG--CGTTTCCTTTCTCGAAAGAGATTGGTAAACCAGTGAATGTTTGTCGTGATTGGG 97 Query 240 ATAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAG 298 || | |||||||||||| ||| | |||||||||| || |||||| | | ||||||| Sbjct 96 ATCGGAAATTGCAATTATTT-TCTGTGAACGAGGAATTCCAAGTAAGTGTGAGTCATCAA 38 Query 299 CACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | |||| ||||||||||||||||||||||| Sbjct 37 CTCGCGCTGATTACGTCCCTGCCCTTTGTA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947126364672