Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1407 379 7e-103 seq2 325 1e-86 seq1755 307 4e-81 seq1569 224 3e-56 >seq1407 Length=3311 Score = 379 bits (420), Expect = 7e-103 Identities = 378/483 (78%), Gaps = 9/483 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||||||||| ||||||||||||| | |||||| |||| Sbjct 795 CGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCGGGCGATCTATCCAT 854 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| |||| |||||||| | Sbjct 855 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTACCGTTGAAAAGT 914 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| |||||| | || |||||||||||| ||| || ||| ||||||||||||| Sbjct 915 TAGCGGATGACCTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTC 974 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| || Sbjct 975 CTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTGTAGGGGGTAGAGCACTGTTTCGG 1034 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTTAC 299 |||||||||||| |||||||||||||| |||||||||||||| | | ||| | Sbjct 1035 CTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTACAAGTGCCGAG 1094 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | ||||| | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 1095 CATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 1152 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 |||||||||| ||| || | | | ||||| | ||||| || || ||| ||||| Sbjct 1153 GTCAGCTAAGGTCCCAAAGTTATGGTTAAGTGGGA--AACGATGTGGGAAGGCTTAGACA 1210 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| |||||||| |||||||||| | |||||||| |||||| |||||||||||| Sbjct 1211 GCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGTC 1269 Query 478 GAG 480 ||| Sbjct 1270 GAG 1272 >seq2 Length=124989 Score = 325 bits (360), Expect = 1e-86 Identities = 375/497 (75%), Gaps = 7/497 (1%) Strand=Plus/Minus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 ||||| ||||||| |||||||||||||||||||| ||||| ||||| || | ||| Sbjct 5081 TAGACGCGAAACCTGGTGATCTACCCATGGCCAGGCTGAAGCGCTGGTAAAACAGCGTGG 5022 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| |||||| |||||| || || |||||||||||||||||||||||||||| Sbjct 5021 AGGGCCGAACTGGTGGATGTTGCAACATCCTCGGATGAGCTGTGGGTAGGGGTGAAAGGC 4962 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAA--GT 210 ||| ||||| |||||||||| || |||||||||| |||||| |||| || || Sbjct 4961 TAATCAAACCAGGAAATAGCTCGTACTCTCCGAAATGCTTTTAGGAGCAGCCTTAAATGT 4902 Query 211 ATCACCATCGGGGGTAGAGC-ACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCA 269 || || | | |||||||| || | | || || |||| | | |||| | | Sbjct 4901 AT-ACTAATAGAGGTAGAGCTACCGATC-GGATAAGGGGGAGTAAAATCCTACCGTATCT 4844 Query 270 TTGCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 | |||||||||||| || ||||||| || ||||||||| ||||||||||||| Sbjct 4843 AGACGAACTCCGAATGCT-ATTAGTTTTATTTAGG-AGTGAGGGCCAGGGTGCTAAGGTC 4786 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTT 389 | | || ||||| || || || ||| ||||||||||| ||| |||| |||||||| Sbjct 4785 CTGGTCCAAGAGGGAAACAACCCAGACCATCAGCTAAGGTCCCAAAATATATGCTAAGTT 4726 Query 390 AAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCAT 449 ||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4725 GAACAAAGGAAGTCCAGTTGCTAAGACAGCCAGGATGTTGGCTTGGAAGCAGCCATTCAT 4666 Query 450 TTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATT 509 | |||||||||||||||||||||| |||||| ||||| | ||||| |||| ||| Sbjct 4665 TCAAAGAGTGCGTAACAGCTCACTGGTCGAGTGACAGGGCGCCAAGAATAAACGGGCATT 4606 Query 510 AAGTTGTCTACCGAAGC 526 ||| ||||||||| Sbjct 4605 AAGCATATTACCGAAGC 4589 >seq1755 Length=4651 Score = 307 bits (340), Expect = 4e-81 Identities = 361/480 (75%), Gaps = 10/480 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| |||||||||| |||| | || ||||||||||||||||||||||| |||| Sbjct 2717 CGAGTCTGAACAGGGCGTTCAGTTCGTCGGATTAGACCCGAAACCAAGTGATCTAGCCAT 2658 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | |||| ||||||| |||||||| ||||||| |||||||| | ||||| || | Sbjct 2657 GAGCAGGTTGAAGGTAAGGTAACACTTACTGGAGGACCGAACCCGCATCTGTTGCAATAG 2598 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||| ||||| |||||||||||||| || |||||||||| ||||||||||||| Sbjct 2597 ATTGGGATGACTTGTGGCTAGGGGTGAAAGGCCAATCAAACTTGGAGATAGCTGGTTCTC 2538 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAA--GTATCACCATCGGGGGTAGAGCACTGTTAT 238 ||||| |||||||||||| || || | | || ||| ||||||||||||||||| Sbjct 2537 CGCGAAATCTATTTAGGTAGAGCGTCGATCGAAT-ACCTTCGGGGGTAGAGCACTGGATG 2479 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTT 297 ||||||||| || ||| |||||||||| |||||||||||| | | ||| | Sbjct 2478 GGCTAGGGGATCTCACCGATTTACCAAACCTAACCAAACTCCGAATACCGAAGAGTACTA 2419 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | || || | ||| ||||||||| |||||| ||||| || || || ||| Sbjct 2418 ATCGGCAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGCAACAACCCTGACC 2361 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 | || |||||| ||| || | | ||||||| | || || || | | | || ||| Sbjct 2360 ACCATCTAAGGTCCCTAAGTTATGGCTAAGTGGGA--AAGGATGTGAGGATCCCAAAACA 2303 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 | ||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||| Sbjct 2302 ACCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAACAGCTCACTGGTC 2244 >seq1569 Length=2469 Score = 224 bits (248), Expect = 3e-56 Identities = 277/371 (75%), Gaps = 7/371 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | |||| || |||||| ||||||| ||||||||||||| Sbjct 2464 CGAGTCTGAATAGGGCGTATAGTCAGGGGAGGTAGACGCGAAACCTTGTGATCTACCCAT 2405 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| |||||||||||||||||| ||||||| ||||||| | || |||||||| | Sbjct 2404 GGACAGGTTGAAGGTGCGGTAACACGTACTGGAGGACCGAACCGATAAACGTTGAAAAGT 2345 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||| |||||||||||||||||||||||| |||||| |||||||||| || ||| Sbjct 2344 TTCCGGATGATCTGTGGGTAGGGGTGAAAGGCTAATCAAACTGGGAAATAGCTCGTACTC 2285 Query 181 TCCGAAAACTATTTAGGTAGTGC-CTCAAGTATCACCA-TCGGGGGTAGAGC-ACTGTTA 237 |||||| | |||||| | || | | ||| | | | |||||||| |||| | Sbjct 2284 CCCGAAATGTTTTTAGGAACAGCGTTGAGGTAAAGTTATTTAGAGGTAGAGCTACTGAT- 2226 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 ||| | |||| | | ||||||| | |||||||||||||| | | | | Sbjct 2225 TGGGTGCGGGGGAGTCAAATCCTACCAAATCCAGACAAACTCCGAATGCTAAATAATAT- 2167 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | | ||||||| | ||||||||||||| | |||||||| ||||| || ||| Sbjct 2166 -ACTCAGCAGTGAGGCCCGGGGTGCTAAGGTCACGGGCCGAGAGGGAAAGAACCCAGACC 2108 Query 358 ATCAGCTAAGG 368 ||||||||||| Sbjct 2107 ATCAGCTAAGG 2097 Score = 154 bits (170), Expect = 5e-35 Identities = 116/134 (87%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 428 TGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGG 487 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2041 TGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGCGATCGT 1982 Query 488 GCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG-ATCATTTATATGAT 546 || |||||||||| |||| ||||||| || |||||||| |||| | ||| |||| | Sbjct 1981 GCATGGATAATAAACGGGCATTAAGTAGTACACCGAAGCTATGGGTAATATTAATATTA- 1923 Query 547 CGGTAGGGGAGCAT 560 |||||||||||||| Sbjct 1922 CGGTAGGGGAGCAT 1909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689468650496