Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq116 399 7e-109 seq6162 210 7e-52 seq6 82.4 2e-13 >seq116 Length=14452 Score = 399 bits (442), Expect = 7e-109 Identities = 265/294 (90%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| |||||||||||| | | |||| | | | || |||||||||||||||||| Sbjct 4443 CTCCCACCTATTCTACACCTTTTAGGTCACTATGCCATATCAGACTAGAGTCAAGCTCAA 4502 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||| || || | |||||||||| | || ||||||||||| Sbjct 4503 CAGGGTCTTCTTTCCCCGCTGTTTTTGCTAGGCCCGTTCCCCTAGCAGTGGTTTCGCTGT 4562 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 4563 ATAGTAGTTAGGGACAGTGGGAATCTCATTGATCCATTCATGCGCGTCACTAATTAGATG 4622 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 4623 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTGCTAGG 4682 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 4683 TTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCA 4736 Score = 131 bits (144), Expect = 5e-28 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||||||||||||||| |||| || ||| |||||| |||||||| Sbjct 4137 CTTTTGCTCTACGTGAGATTTCTGTTCTCACTGAGCCCGTCTTTGGACACTTGCGTTATC 4196 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||| ||||||||||||||||||||||||||||||| | |||| Sbjct 4197 TTTTAACAAATGTGCCGCCCCAGCCAAACTCCCCACCTGAAACTGTC 4243 >seq6162 Length=274 Score = 210 bits (232), Expect = 7e-52 Identities = 215/272 (79%), Gaps = 14/272 (5%) Strand=Plus/Plus Query 38 TGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTC 97 |||| | ||||||||||||||||||| |||| |||||||| ||||||||| ||||||| Sbjct 6 TGAGCTCGCCTTAGGACACCTGCGTTACAGTTTGACAGATGTACCGCCCCAGTCAAACTC 65 Query 98 CCCACCTGACAATGTCATCAACCCGGATCG---GCCCG-CGA-AGGA---CCTTAACGCC 149 ||| ||||||||||||||| | ||| ||| ||||| ||| ||| ||||||| || Sbjct 66 CCCGCCTGACAATGTCATCGATGCGGGTCGACCGCCCGCCGAGCGGACAGCCTTAACACC 125 Query 150 AGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGG 208 | ||| | | | | ||| || ||||| || || || ||||||| || |||||| | Sbjct 126 AAAAACAAGAACAATAAAGTTCAATTCCGTTTTATCGAATAAGTAAGGAATCGATAAAAG 185 Query 209 TAGTGGTATTTCAC--TTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCAT 266 |||||||||||||| ||| ||| || | ||||||||||| |||||||||||| | Sbjct 186 TAGTGGTATTTCACCGTTG-GCC--AAAGCCTCCCACTTATACTACACCTCTCATGATTC 242 Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 ||||||||||| |||||||||||||||||||| Sbjct 243 TTCACAAAGTCAGACTAGAGTCAAGCTCAACA 274 >seq6 Length=53452 Score = 82.4 bits (90), Expect = 2e-13 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||||| || | |||||| |||||||||| ||||| ||||| |||| ||| |||| Sbjct 8337 GACAGTAGGGAGGTCGTTACACCATTCATGCACGTCAAAAATTACTTGACAAGGAATTTC 8278 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 |||||||| || ||||| ||||| ||||||||||| Sbjct 8277 GCTACCTTTGGACCGTCATGGTTACAGCCGCCGTTTAC 8240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635072879552