Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq54 304 3e-80 seq2442 210 5e-52 seq606 190 4e-46 seq5871 82.4 2e-13 seq6 77.0 7e-12 >seq54 Length=99412 Score = 304 bits (336), Expect = 3e-80 Identities = 257/316 (81%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| ||||||||| || ||||| | |||| ||| | | Sbjct 13924 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCTTATGGTACCTTCAAGAACCCTCGCAA 13983 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || ||||||| || |||||||| ||||||||| || || |||||||||| ||||| Sbjct 13984 GGGTTTTTTTATTTCCATATAAAAGCAGTTTACAACCCAGAGGGCCTTCATCCTGCACGC 14043 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | |||||||||||| || || ||||||||||||||||| ||||||||||||||||| Sbjct 14044 GGCATGGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCCTACTGCTGCCTCCCGTAG 14103 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||| ||||||| ||| |||||||||| |||||||||||||||||| |||| Sbjct 14104 GAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGACTTTCCTCTCAGAACCCCTACCCAT 14163 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || |||| ||| ||||| | || |||| ||||||| |||||| |||||| | | Sbjct 14164 CGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATGGGACGCATGCCCATCTTGTA 14223 Query 301 CCGATGAATCTTTAAT 316 ||| | | |||| || Sbjct 14224 CCGCCGGAGCTTTCAT 14239 >seq2442 Length=2623 Score = 210 bits (232), Expect = 5e-52 Identities = 229/313 (73%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||| ||||||| | ||||||| || ||| |||||| Sbjct 244 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCCTTCGGTACATTCAGCTTCCTACACGT 303 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||| | ||||||||| ||||||| ||||||| | || || | || |||| ||||| Sbjct 304 AGAAAGGTTTATTCCCGAATAAAAGCAGTTTACGACCCAGAGGGCTGTCTTCCTGCACGC 363 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||||| ||||||||||||||| Sbjct 364 GGCATGGCTGGTTNNNNNNNNNNNNNNNNNNNNNNNNNN------TGCTGCCTCCCGTAG 417 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| |||||||| | |||||||||| |||||| ||| Sbjct 418 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTCAGATCCCCTAGTCAT 477 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || ||||||||||||||||||| |||| |||||| |||||| |||||| || Sbjct 478 CGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACGCATGCCCATCTTAAT 537 Query 301 CCGATGAATCTTT 313 || || ||| ||| Sbjct 538 CCTATAAATATTT 550 >seq606 Length=289815 Score = 190 bits (210), Expect = 4e-46 Identities = 182/232 (78%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||||| || ||| |||||||| |||||| | ||||||| |||| || Sbjct 490 AAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 548 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||| Sbjct 549 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 608 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||| ||||| || | |||||||||| | |||| ||||| | || ||| |||| ||| Sbjct 609 CCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTA 668 Query 262 CCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313 |||| || |||| ||||| ||||| | |||| | ||||| ||||||| Sbjct 669 CCCCACCAACTAGCTAATCCAACGCGGGCTCATCCATCTCCGATAAATCTTT 720 >seq5871 Length=500 Score = 82.4 bits (90), Expect = 2e-13 Identities = 146/207 (71%), Gaps = 11/207 (5%) Strand=Plus/Plus Query 75 CCTTAT-AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTT 133 |||||| |||||| |||||| | || |||| ||| |||| | | ||||| | Sbjct 96 CCTTATTAAAAGAGGTTTACGCTT--TA----CTTCTTCCCTCACTCAGTGTAGCTGGAT 149 Query 134 CAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGT 193 || || || ||||| ||||||||||| ||||| |||| | | |||||||| | | Sbjct 150 CAAGCTTGCGCTCATTGTCCAATATTCCTTACTGCAGCCT--CTTCAGAGTTTGGTCGTT 207 Query 194 GTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC-CCTATCCATCGTAGGCTAGGT 252 | ||| | ||||||||| || | | ||||| ||||| |||| ||| ||| | ||| Sbjct 208 CTTTCAATACCAATGTGGATGATCATTCTCTC-GAACCACCTACGAATCTCAGGTTTGGT 266 Query 253 GGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||||| || ||| |||||| Sbjct 267 AAGCCTTTACCCCACCAACTGCCTAAT 293 >seq6 Length=53452 Score = 77.0 bits (84), Expect = 7e-12 Identities = 107/149 (72%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| || ||| ||| |||| |||||||||||||||||||||| | | |||||| Sbjct 52420 GCTGGATCTAACTTACGTTAATTGTCCAATATTCCTCACTGCTGCCT--CTTTCGAGTTT 52363 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 || | | | ||| ||||||||||| || | || || |||| | |||| ||| | || Sbjct 52362 GGCCTTTTTTTCAATTCCAATGTGGATGATCATCTTCCCAGACCACCTACGAATCTTCGG 52303 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACC 275 || | | | | |||||| | |||||| Sbjct 52302 CTTGATAAGACATTACCCTATCAACTACC 52274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068716911488