Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3684 347 4e-93 seq116 271 2e-70 seq6813 116 1e-23 >seq3684 Length=1131 Score = 347 bits (384), Expect = 4e-93 Identities = 368/478 (77%), Gaps = 8/478 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAA-AAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||| |||||| || || | | || ||||| | || || ||||| | ||||||||| Sbjct 477 GTACCCATTCCGATAACCGGCCTCATTAAGAGAACGGTCTCGTTATTTCTCGTCACTACC 418 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| | | || || |||||||||||||||||||||||| ||||| || || || ||| | Sbjct 417 TCCTCTTTCCGAGAGTGGGTAATTTGCGCGCCTGCTGCCATCCTTAGACGTAGTGGCCAT 358 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||| || |||||||| |||||||||||||| ||||||||||| | |||||||| Sbjct 357 TTCTCAGGCCCCTTCTCCGGAGTCGAACCCTAATTCTCCGTTACCCGTCAACACCATGGT 298 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || ||| || |||||||||| | |||||| |||||| | | | |||| | ||||||| Sbjct 297 AGTCCAATACACTACCATCGACAATTGATAAGGCAGATACTCGTATGACACGTCGCCGGT 238 Query 240 TCA-AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 ||| || || |||||| | ||||||||| ||| ||| ||| | | || | || | Sbjct 237 TCATAGACCGTGCGATCAGCTAAGTTATTCTGAGTCAGCAAAACACGACCAAAGCCGCTT 178 Query 299 GTTTTTTATCTAATAAATACACCCCTTCCG--AAGTC-GGGGTTTTTAGCATGTATTAGC 355 | |||| |||||||||| ||| | ||||| | ||| | | ||| |||||||||||| Sbjct 177 GGTTTTGCTCTAATAAATGCACTCTTTCCGCTAGGTCAGAGCTTTAGCGCATGTATTAGC 118 Query 356 TCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAACTGAT 413 |||||||||||||| |||||||| ||| | | | ||||| || | ||| ||||| Sbjct 117 TCTAGAATTACCACAGTTATCCAAGTAACTTGTGTCAAAATCAAGTAGATAATAGCTGAT 58 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCT 471 |||||||||| ||||| ||||||| || | || | |||||||||||||||||||||| Sbjct 57 TTAATGAGCCGTTCGCGGTTTCACGATA-AAATCGTTTATACTTAGACATGCATGGCT 1 >seq116 Length=14452 Score = 271 bits (300), Expect = 2e-70 Identities = 358/485 (74%), Gaps = 40/485 (8%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 |||||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||||| Sbjct 9764 TATTTATTGTCACTACTTCCCCGTATTGGGATTGAGTAATTTGCGCGCCTGCTGCCTTCC 9823 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 | || ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 9824 ATAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTA 9883 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| |||||||||||||| || | |||||||||||||||||||||||| || Sbjct 9884 CCCGTTACAACCATGGTAGGCCAATACCGTACCATCGAAAGTTGATAGGGCAG-----TG 9938 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGAT-TCGTTAAG-----TTATTATGAATCAC 276 | || | | | || || || ||| ||| | | ||||| | |||| Sbjct 9939 A---CACAGTAGACTTGTCGAG---ATTAGATCTCGATCGGCAGCATTATTTGGTCTCAC 9992 Query 277 CAA-GGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAA------ATACACCCCTTCCGA 329 ||| || ||| ||| |||| | | ||||||| | || || | Sbjct 9993 CAACTGACCCCTTGCGGGGATTGG-TAAAAAGCTAATAATCGCGGAGCTTCCAGTTGCCC 10051 Query 330 AGTCGGGGTT--TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC---ATGTAGT 384 |||| | |||| ||||||||||| | || |||| ||||||||| | || || Sbjct 10052 AGTCACCCCTCGTTTA-CATGTATTAGC-CCCGATTTACTGCGGTTATCCAAAAGGTCGT 10109 Query 385 AAGGTACTA---TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 | | | || | || || |||| | ||||||||| | ||||||||| ||| Sbjct 10110 GAAACCCGAAAGTCTAGTAGTTTATCACTGTTGTAATGAGCCGTCTGCAGTTTCATCGTA 10169 Query 442 T--AGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10170 TAAAGAT---TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 10226 Query 500 GGCAG 504 ||||| Sbjct 10227 GGCAG 10231 >seq6813 Length=534 Score = 116 bits (128), Expect = 1e-23 Identities = 82/92 (89%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 415 TAATGAGCCATTCGCAGTTTCACTGTATA--GATTGCTTATACTTAGACATGCATGGCTT 472 ||||||||| | ||||||||| ||||| |||| |||||||||||||||||||||| Sbjct 533 TAATGAGCCGTCTGCAGTTTCATCGTATAAAGATT---TATACTTAGACATGCATGGCTT 477 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||| Sbjct 476 AATCTTTGAGACAAGCATATGACTACTGGCAG 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510282581504