Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq386 178 3e-40 seq2 138 3e-28 seq3281 96.9 9e-16 >seq386 Length=121086 Score = 178 bits (196), Expect = 3e-40 Identities = 356/528 (67%), Gaps = 0/528 (0%) Strand=Plus/Minus Query 37693 CGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCT 37752 ||||||||| | ||||| || || ||||| | || || |||||| |||| | Sbjct 3773 CGGCGTCGACCGCGGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGAT 3714 Query 37753 CCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTC 37812 || ||| | | | || ||||| | |||| || || ||| ||||| || || Sbjct 3713 GCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATC 3654 Query 37813 CATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGA 37872 |||||| | || ||||| ||||| | |||||||| |||||| || |||| | |||| Sbjct 3653 CATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGA 3594 Query 37873 GAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTA 37932 || ||||||||||| |||||||| ||||| ||||| |||||||||||||| ||| | || Sbjct 3593 AAACGGCGTGACGATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTA 3534 Query 37933 CGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATG 37992 ||| || |||||||| ||| | | ||||| ||||| ||||| || Sbjct 3533 TGGCTATCAGTGGCGCTCCTGGCCTGCGCCCGACGGCCGGCATATCGATCAGATTGCGAA 3474 Query 37993 GGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAA 38052 | ||| | ||| || | |||||| |||| || || ||| | || ||| ||||| Sbjct 3473 TCTCGTCAGTGCGATAAAGCAAAATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAA 3414 Query 38053 TGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGT 38112 | || | || || ||| ||||||||| || || | | || |||||||| || Sbjct 3413 TCCGGCGCTCGTCGATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGT 3354 Query 38113 CGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTT 38172 ||| |||| | | || ||| | | |||||||||| |||| ||| | || | Sbjct 3353 GGCCGACGGAAAGCTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGT 3294 Query 38173 GCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCA 38220 |||||| || ||||| ||| || ||| |||| | ||||| || || Sbjct 3293 GCCGTTCAATATCGCATCCTATGCCCTGCTGACCCTCATGGTGGCGCA 3246 >seq2 Length=124989 Score = 138 bits (152), Expect = 3e-28 Identities = 315/469 (67%), Gaps = 4/469 (1%) Strand=Plus/Minus Query 37652 ATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGAC 37711 |||||||||||| | || ||||| ||| | | |||| | |||||| ||||| |||| Sbjct 93546 ATGAAACAATATCTCGATTTGCTACAACATGTACTAGACCATGGCGTCCAAAAATCAGAC 93487 Query 37712 CGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGAT 37771 || || || || ||| | || ||| |||| | | || ||||| | Sbjct 93486 CGCACCGGTACGGGAACGAAAAGCATTTTTGGCTACCAGATGAGATTTGACTTATCTGCG 93427 Query 37772 GGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTT 37831 |||||||| | |||| || ||||| |||||| | || ||| || |||||||||| Sbjct 93426 GGATTTCCTTTGTTGACCACCAAAAAGCTGCATACCAAATCGATCGTTCATGAACTGCTG 93367 Query 37832 TGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGG 37891 ||||||||| ||||| |||||||| | || | | || |||| || || || ||| Sbjct 93366 TGGTTTTTACAAGGCAATACGAACATTGCTTACCTCAACCAGCATGGGGTAACTATCTGG 93307 Query 37892 GATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCG 37951 ||||||||||| || || | || || | || || |||| || |||||||| | Sbjct 93306 GATGAGTGGGCTGATAAACAAGGGAATTTAGGACCTGTTTATGGATCGCAATGGAGAAGC 93247 Query 37952 TGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAA 38011 ||| || |||| | |||||||| || || || || || || | || ||| Sbjct 93246 TGGCCTACTGCCAACGGAGATACCATCGATCAAATATCACAAGTGATCCAACAAATTAAA 93187 Query 38012 CGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTA-GCAGAATTGGACGA 38070 |||||| |||| || || |||| || || |||||||||||| ||| || || | Sbjct 93186 GAAAATCCTGATTCGCGGAGGTTGCTCGTCAGTGCTTGGAATGTAGGCATTATACCAC-A 93128 Query 38071 GATGAAGCTGCCGCCGTGTCAT-TACGCCTTTCAGTTCTATGTCGCCAA 38118 ||| ||| || || || ||| ||| ||||| || ||||| ||||| Sbjct 93127 AATGGCGCTTCCTCCTTGCCATGTAC-TTTTTCAATTTTATGTAGCCAA 93080 >seq3281 Length=2714 Score = 96.9 bits (106), Expect = 9e-16 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 37739 TTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAA 37798 || |||| ||| | | |||||| | || || || ||||| || || || || |||||| Sbjct 1685 TTTGGCCATCAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAA 1744 Query 37799 TTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTC 37858 | ||| | ||||| || | |||||| | |||||||||| || || || || | Sbjct 1745 CTTCATTTAAAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATT 1804 Query 37859 CGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGAT 37918 |||| || | | || || | ||| |||||||||||||| || |||||||| || Sbjct 1805 GGCTACCTGAAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGAC 1864 Query 37919 CTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGG 37954 || ||||| |||| || | |||||||| || ||| Sbjct 1865 CTGGGCCCTGTTTATGGATCACAATGGCGTTCATGG 1900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130627939805100