Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq4291 251 2e-62 seq2405 163 9e-36 seq385 114 4e-21 >seq4291 Length=2902 Score = 251 bits (278), Expect = 2e-62 Identities = 668/1014 (66%), Gaps = 26/1014 (3%) Strand=Plus/Plus Query 1684 GATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGT- 1742 ||||| | || || || | ||||| || |||||||| || || |||| ||||| || Sbjct 1904 GATGTTCATGCGCGGCAAATACTTGATTCCCGCGGTAATCCTACTATTGAGGTAGACGTA 1963 Query 1743 -TTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTG 1801 ||||| |||| |||| | || || | || |||||||| || ||||| |||| Sbjct 1964 ATTACAGAGAATGGTGTGCTT--GGCCGTGCAGCAGTACCTTCAGGTGCTTCAACGGGTG 2021 Query 1802 AACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTC 1861 |||||||| ||||| ||| | || ||| ||| || || || ||| | Sbjct 2022 TTCACGAAGCCGTAGAGCTTAGGGACAATGATAAATCTGTATATATGGGCAAAGGTGTTT 2081 Query 1862 AAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTAC 1921 |||||| |||| ||||| ||| | ||||| || | | | ||| | || ||| Sbjct 2082 TAAAAGCTGTTGCCAACGTTAACGATAAGATTGCCGATGCCTTAAAAGGAGTGGATGTAT 2141 Query 1922 GTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTA 1981 ||| ||| | | || || | ||||||| || || || || ||| ||||| | Sbjct 2142 TTGAGCAAAATGCGATCGATGACCTAATGATCAAACTGGATGGCACAGAAAATAAAGGAA 2201 Query 1982 AACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACT 2041 |||| |||||||| || ||| | ||||| ||| | || || || |||||||| | Sbjct 2202 AACTGGGTGCCAATGCCATTTTAGGTGTTTCTTTAGCCGTGGCTAAAGCAGCTGCACAGG 2261 Query 2042 A---CCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAA 2098 | || | | ||| | ||| | || |||| || | || | || || || | Sbjct 2262 AAAGCCGTCAG---CCATTATACCGTTATATTGGTGGTGTAAATGCCAATACCCTGCCCA 2318 Query 2099 CTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAG 2158 ||||||||||||||| | ||||| ||||||||||| || || || || ||||| || | Sbjct 2319 TCCCAATGATGAACATCGTAAACGGCGGTTCTCACTCTGATGCCCCTATTGCTTTTCAGG 2378 Query 2159 AATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTG 2218 |||||||||| | || | |||||| | | || ||||| | | ||||| | | Sbjct 2379 AATTTATGATCATGCCAGTTGGTGCGACTTCTTTTTCCGAAGCCTTAAGATGGGGAACAG 2438 Query 2219 AAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTG 2278 || | || ||| || || || | | || | || ||| || || ||||||| Sbjct 2439 AAGTATTTCACAACCTGAAAGCCATTTTACATGACAGGGGCCTTTCTACGGCTGTAGGTG 2498 Query 2279 ACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCA 2338 ||||||||||||| || || ||| || || |||||||||| || ||||| || | | Sbjct 2499 ACGAAGGTGGTTTTGCCCCAACTTTTGATGGTACTGAAGATGCAGTGGAAACCATTCTTA 2558 Query 2339 AAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGTG 2398 |||| |||||| || || || ||||||| | | | | | | ||||||| | Sbjct 2559 AAGCCATCGAAAAAGCAGGTTACAAACCAGGTGAGCAAATCTGCCTTGCTTTTGACTGCG 2618 Query 2399 CATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTG 2458 || | |||||||| ||| | ||| | ||| ||||| || || ||||||||||| | Sbjct 2619 CAGCCTCTGAATTTTACAA---AGACGGCAAA---TACGATTATACAAAATTTGAAGGCG 2672 Query 2459 AAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACA 2518 | | ||| ||||| | ||| ||||| || ||||| | | || || Sbjct 2673 ATAAAGGTGCCGTTCGCAGCAGTGCTGAACAGGCAGAATACCTGGCTCAGCTGTCAGCCA 2732 Query 2519 AATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAAT 2578 |||| ||||||||| |||| |||||||| |||| |||| | ||||||| || ||||||| Sbjct 2733 AATATCCAATCATCTCTATTGAAGATGGAATGGCCGAAGATGACTGGGCTGGCTGGAAAT 2792 Query 2579 CTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAAC-- 2636 || || ||| | |||| |||||| |||| || || || || || ||||| Sbjct 2793 TGCTGACCGAAAAAATCGGTGACCGCGTTCAACTGGTAGGAGATGATTTGTTTGTAACCA 2852 Query 2637 ---TAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAAT 2687 ||| || | |||| || ||||||||| | ||| |||| ||||| || Sbjct 2853 ATGTAAAAC-GTTTAC----AACAAGGTATTGACAACCACACTGCAAACTCTAT 2901 >seq2405 Length=7062 Score = 163 bits (180), Expect = 9e-36 Identities = 279/402 (69%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| |||||| | |||||||| || ||||||| |||||||| || |||||| Sbjct 1931 TACCCGATCATCTCGATCGAAGACGGCCTGGACGAGTCCGACTGGGCTGGCTGGAAAGTG 1872 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 | || || | || | || | || |||| || |||||| | ||||| || ||| Sbjct 1871 TTGACCGACAAGATCGGCGAGAAGATCCAGCTGGTGGGCGACGACCTGTTCGTGACCAAC 1812 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGT 2699 || ||| || |||| || | | || | | | || ||||| ||||| ||||| | Sbjct 1811 ACCAAGATCCTGAAAGAAGGCATCG-ACAAAAAGATCGCCAACTCGATCCTGATCAAGTT 1753 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| ||||| || |||| ||||| | || || ||| | ||||| || | || || Sbjct 1752 CAACCAGATCGGCACCCTGACCGAAACCCTGGAAGCCATCCAGATGGCCAAGGCTGCGGG 1693 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 ||||| || || | || ||||| || || ||||| ||||| || || || || || | Sbjct 1692 CTACACCGCCGTGATCTCCCACCGCTCCGGCGAAACCGAAGACTCGACCATTGCCGACCT 1633 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || || | ||| ||||| || || ||||| ||||| ||| ||| | || || | Sbjct 1632 GGCCGTGGGCACTTCGGCTGGGCAGATCAAGACCGGTTCCCTGTGCCGTTCCGATCGCGT 1573 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921 | | || |||||||||||||| ||||||||||| ||||| || Sbjct 1572 TTCCAAGTACAACCAATTGCTGCGTATCGAAGAGCAACTGGG 1531 >seq385 Length=624889 Score = 114 bits (126), Expect = 4e-21 Identities = 261/390 (67%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| ||||||| |||||||| || ||| |||| | |||||||| || ||||||| Sbjct 200708 TACCCGATCATCAGCATCGAAGACGGCATGTCCGAAGATGACTGGGAAGGCTGGAAATAC 200649 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || | | || | || || | || || ||||| | ||||| || || Sbjct 200648 CTGACCGATCTGATCGGCGACAAGTGCCAGCTCGTCGGCGACGATCTGTTCGTCACCAAT 200589 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACA-CGCTGCTAACTCAATCCTTATCAAAGT 2699 | ||| || | || || ||| || || || || || || |||| || Sbjct 200588 TCGGCTCGTCTGCGCGACGGCATCA-AGATGGGCGTGGCCAATTCCATTCTCGTCAAGGT 200530 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| ||||| || ||| | |||||||||||||| |||| | |||| | ||||| Sbjct 200529 CAACCAGATCGGCACGTTGTCGGAAACTTTTGACGCGGTCGATACGGCGCACCGCGCTGG 200470 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 || || || || | || ||||| || |||||||| ||||| || || || || ||| | Sbjct 200469 CTATACGGCCGTCATGTCGCACCGCTCCGGTGAAACCGAAGACTCGACGATTGCCGATCT 200410 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || || || || || || || || ||||| || || | || || | ||||| | Sbjct 200409 CGCCGTCGCCACCAATTGCGGACAGATCAAGACCGGCTCGCTTTCCCGCTCCGACCGGGT 200350 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGA 2909 || || |||||||| | | |||||||| Sbjct 200349 CGCCAAGTACAACCAGCTCATCCGTATCGA 200320 Score = 114 bits (126), Expect = 4e-21 Identities = 201/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 1948 ATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGT 2007 ||||||| ||| || || || || ||||| | ||||| |||||||| ||||| || Sbjct 201263 ATGATCGATCTCGATGGCACGCCGAACAAGAGCCGTCTTGGCGCCAACGCCATTCTCGGC 201204 Query 2008 GTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTAC 2067 || || |||| || || || || ||||| | | | | || || ||| |||| Sbjct 201203 GTATCGCTCGCCGTTGCCAAGGCCGCCGCTGAATCCTCCGGCCTGCCGCTCTACCGCTAT 201144 Query 2068 CTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGT 2127 || |||||| ||| | | || || || || |||||||||||||||||||| || Sbjct 201143 CTCGGCGGACCGAACGCCCATGTCCTGCCGGTGCCGATGATGAACATCATCAACGGCGGC 201084 Query 2128 TCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCA 2187 | || | ||| ||| |||| ||| || ||||| |||||| | || | ||| ||| | Sbjct 201083 GCGCATGCCGACAATCCCATCGATTTTCAGGAATTCATGATTCTCCCGGTTGGCGCATCG 201024 Query 2188 ACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAA 2240 || | ||||| | |||| ||||| ||| | |||||| |||| ||||| Sbjct 201023 TCACTGGCCGAAGCCGTGCGTTACGGTGCGGAAGTGTTCCACACGCTGAAGAA 200971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156023995120056