Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq386 140 5e-28 seq3281 104 4e-17 seq1979 95.1 2e-14 seq6155 89.7 8e-13 seq2 84.2 3e-11 >seq386 Length=121086 Score = 140 bits (154), Expect = 5e-28 Identities = 200/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 196086 TCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGACCGTACCGGCACAGGCACTA 196145 |||| ||||| |||||| || |||| |||| | ||||||||||| |||||||| | Sbjct 3794 TCTT-CAGCATGTGCTCGATACCGGCGTCGACCGCGGCGACCGTACCGGGACAGGCAC-A 3737 Query 196146 CGT-CCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACC 196204 ||| || | ||||| |||||||| ||||||||| | || || || | || Sbjct 3736 CGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACG 3677 Query 196205 ACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGAC 196264 || |||||||| ||||| |||||||| || || |||||||||||||| || || || Sbjct 3676 ACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAA 3617 Query 196265 ACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAA 196324 || |||||| || || || || ||||| || | |||||| | || ||||| |||| Sbjct 3616 ACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATCTGGGATGAATGGGCCGACGAG 3557 Query 196325 CTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| | || |||||||| || || | |||||||| Sbjct 3556 AACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 3519 >seq3281 Length=2714 Score = 104 bits (114), Expect = 4e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 196163 CAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTG 196222 |||||| | ||| | || || || || || || ||||||||||| || ||||| ||| | Sbjct 1694 CAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTA 1753 Query 196223 CGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTG 196282 ||||| || || |||||| | ||||| | | ||||||||||| || |||||| Sbjct 1754 AAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTG 1813 Query 196283 AATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCG 196342 || | ||| ||| |||||| | |||||||| | ||| |||| ||||||| || Sbjct 1814 AAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCT 1873 Query 196343 GTTTACGGTAAGCAGTGGCGTGAATGG 196369 ||||| || || |||||| |||| Sbjct 1874 GTTTATGGATCACAATGGCGTTCATGG 1900 >seq1979 Length=9990 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 ||||| ||||||||| | ||||| ||||| || || | |||| ||||| || Sbjct 9157 GACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTG 9216 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 | ||| | | | || ||||||||||||||| ||||| || || || || |||| Sbjct 9217 ATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATC 9276 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGG 196360 ||| |||| ||||| | |||| ||| ||||||| ||||| ||||| |||||||| Sbjct 9277 TGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 9333 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 196808 GATATGTTCCTCGGTGTACCGTTCAACATCGCGTCTTACGCATTGCTGATTCACATGGTG 196867 ||| | |||||||| | |||| ||||| ||| | || ||||| | || ||| || Sbjct 9583 GATGTATTCCTCGGCCTGCCGTACAACACCGCTGCCCTGGCGTTGCTCACCCATATGCTG 9642 Query 196868 GCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTTTGGACTGGCGGTGACGTCCACATC 196927 || || ||| || || | || |||| || | || || ||| |||| | Sbjct 9643 GCCCAGCAGTGCGACCTGATCCCTCACGAGATCATCGTCACCACGGGCGACACCCACGCC 9702 Query 196928 TACTCCAATCACATGGAACAGGTAGAAGAACAGCTGTCTCGTAAACCGAAAGCGTTGCCG 196987 ||| ||| |||||||||||| | | |||||| | || | ||||| | ||||| Sbjct 9703 TACAGCAACCACATGGAACAGATCCAGACCCAGCTGGCGCGCACGCCGAAGAAGCTGCCG 9762 Query 196988 ACGCTGGTTATCAAACGCAAACCGGACAGTATCTTCGATTACAAATTCGAAGACTTCGAA 197047 ||||| ||||| |||||||| | |||| |||||||||||||||||| || ||| Sbjct 9763 GAACTGGTGATCAAGCGCAAACCCGCGTCGATCTACGATTACAAATTCGAAGATTTTGAA 9822 Query 197048 CTGGTAGGCTACGA 197061 | || ||||| || Sbjct 9823 ATCGTGGGCTATGA 9836 >seq6155 Length=618 Score = 89.7 bits (98), Expect = 8e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 576 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 517 Query 4266 CAGGGTCGCCACATTTT 4282 ||| | |||| ||||| Sbjct 516 CAGAGGAGCCAAATTTT 500 >seq2 Length=124989 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||| | ||||||||||||| | |||||||||||||| |||||| Sbjct 49569 GTAGTTCAGTTGGTTAGAATGCCTGCCTGTCACGCAGGAGGTCGCGGGTTCGAGTCCCGT 49628 Query 3857 C 3857 | Sbjct 49629 C 49629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771467425367280