Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq158 91.5 2e-13 seq3307 82.4 1e-10 >seq158 Length=156417 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 19524 TTTTATTCCTCTATAGCTCAATCGGC-AGAGCATCTGACTGTTAATCAGAGGGTTCCTGG 19582 ||||||||||| ||||||| | || ||||||||||||||||||||||||||| |||| Sbjct 72950 TTTTATTCCTCCTTAGCTCAGTTGGTTAGAGCATCTGACTGTTAATCAGAGGGTCGCTGG 72891 Query 19583 TTCGAGTCCAGGTGGAGGAG 19602 ||| ||||||| ||||||| Sbjct 72890 TTCAAGTCCAGCAGGAGGAG 72871 >seq3307 Length=6577 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19528 ATTCCTCTATAGCTCAATCGGCAGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCGA 19587 ||||| | |||||||| | || |||||| ||||||||||||| |||| |||||||||| Sbjct 1776 ATTCCGCGATAGCTCAGTTGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCGA 1717 Query 19588 GTCCAGGTGGAGGAG 19602 |||||||| | |||| Sbjct 1716 GTCCAGGTCGTGGAG 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634018383276000