Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq915 174 5e-39 seq1617 102 2e-17 seq7157 100 8e-17 seq4209 96.9 1e-15 seq1500 93.3 1e-14 >seq915 Length=38681 Score = 174 bits (192), Expect = 5e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 7096 GATGCACAGCAAAGGGTTGATGCTGCGCGCAATGACGCTGTCAATGCTGCTGCTAAGTCT 7155 || || ||||| ||| | || ||||||||||| ||| | ||||||| ||| || Sbjct 38296 GAAGCGCAGCAGAGGATCGACCAGGCGCGCAATGATGCTCTTGATGCTGCCGCTCGCGCT 38355 Query 7156 GGCAGGTTGCAGCAACAGCTCGCAAATATCCGCAAGCAGCTC-GTCGGATATTCCACCAC 7214 ||| |||||||||||||||||| ||||| |||||||| | | | ||| | |||| Sbjct 38356 GGCCGGTTGCAGCAACAGCTCGTTGCCATCCGTGAGCAGCTCAGGCAG-TATAACGCCAC 38414 Query 7215 TGAGTCCATTGGCAATCCAGCCGCAGAAACCGGAGTTTTGCTTGGAGACGTGCTCAGCAA 7274 | || ||| |||||||||| |||||||||||||||| |||||||||||||| Sbjct 38415 TATCGGCACTGGGGCGTCAGCCGCAGACACCGGAGTTTTGCTTGCCGACGTGCTCAGCAA 38474 Query 7275 ATCTGTCGAAAGAAATCGACAGCTGGCAGATTACGCTGACAGGGCAAGAGAAGCAGGATT 7334 |||| |||| |||| ||||| |||||||| ||||||||| |||| ||||| ||| Sbjct 38475 ATCTCTCGAGCGAAACCGACAACTGGCAGAGTACGCTGACCGGGCCGCCGAAGCCGGACG 38534 Query 7335 AGCGTGTGAGGCGCAGTACAATTCGCTG 7362 || ||||| ||||||| |||||||| Sbjct 38535 AGTCTGTGAAAAGCAGTACGATTCGCTG 38562 >seq1617 Length=5386 Score = 102 bits (112), Expect = 2e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 33670 GTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATT 33729 ||||| | ||||||||| | || || || | ||| || | ||||| || ||||| | | Sbjct 4733 GTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACT 4792 Query 33730 TCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCA 33789 || ||||||||||| || | || ||||| |||||||| || |||||| |||| || Sbjct 4793 TCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCT 4852 Query 33790 GTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCA 33849 || || ||| ||| | |||||| || || || | ||| || || ||||| || Sbjct 4853 GTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGACCTGCAGGTTTGCCACTGCGCCCCCG 4912 Query 33850 TTTGGCATGTATCGCACTTCTGGGTC 33875 || || ||||| || ||||| || || Sbjct 4913 TTGGGGATGTAACGGACTTCCGGATC 4938 >seq7157 Length=721 Score = 100 bits (110), Expect = 8e-17 Identities = 159/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 33703 CCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGC 33762 ||||| | ||||||||||| || ||||| |||| |||||| |||| |||||||||||| Sbjct 176 CCTTTTCGCAGATACTCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGC 235 Query 33763 CATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGATTCCGAT-GTAGC 33821 || || || |||||| | || || || |||||| ||||| | || || | || || Sbjct 236 CACTCGGTACGCTCCTGCTGCTGGCCGGTCTGCTTATCTTTCCA-GCTTTCGCTGGTGGC 294 Query 33822 AACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCC 33881 | | || ||| | || ||| ||| || || |||| || ||||| ||||| ||| Sbjct 295 CAGGGTTATGTTCGTTACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCGCCGCC 354 Query 33882 TAATGTGCCGAGGATGATTACTTTATTTACGCCGCGAGTTGCCAT 33926 |||||| || || ||||| || ||||| || |||||| Sbjct 355 GGCGTTGCCGACGAGAATCACTTTGTTGACGCCTCG---TGCCAT 396 >seq4209 Length=1822 Score = 96.9 bits (106), Expect = 1e-15 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 33678 CTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAG 33737 || |||||| | || || || || ||||||| |||||||||||||| |||||||||| Sbjct 420 CTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGAC 479 Query 33738 CTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTT 33797 || ||||| | | || ||||||||||| || | || ||||| || || ||| Sbjct 480 TTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGTCCCGTTTGCTT 539 Query 33798 ATCATTCCATGATTCCGATGTAGCAA--CAGATACGTTGGCAACAGCGCCGCCATTTGGC 33855 ||| |||| || ||| |||| | || | |||| || || || || || Sbjct 540 GTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGA--TTGGTTACTGCATTACCGTTCGGT 597 Query 33856 ATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCCG 33915 | ||| || |||||| || || || | ||||| | | ||| ||||||||||||||| Sbjct 598 AAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAACCAAGATCACTTTATTTACGCCG 657 Query 33916 CGAG 33919 |||| Sbjct 658 CGAG 661 >seq1500 Length=48209 Score = 93.3 bits (102), Expect = 1e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 33691 TAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATA 33750 || || || | ||| || | ||||| |||||||| | ||| ||||||||||| || | Sbjct 46649 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 46708 Query 33751 ACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGAT 33810 || |||||||||||||| || |||||| |||| || || || ||| ||| | Sbjct 46709 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 46768 Query 33811 TCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCT 33870 || ||||| || || | ||| || || ||||| || || || ||||| || ||||| Sbjct 46769 TCTGATGTGGCCACCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCC 46828 Query 33871 GGGTCCTGGCC 33881 || || | ||| Sbjct 46829 GGATCATTGCC 46839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144959416654752