Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq886 143 4e-29 seq1857 104 3e-17 >seq886 Length=30124 Score = 143 bits (158), Expect = 4e-29 Identities = 510/786 (65%), Gaps = 26/786 (3%) Strand=Plus/Plus Query 162253 CATTATGGAGACCTTACCGATGCTTTGAGTATCGTATCTATTATTAAAACAGTTCAACCA 162312 ||||||||||| | || ||| | | | | || ||||||| || || | ||| Sbjct 23513 CATTATGGAGATTTAACAGATTCAACCAATTTAGTTGGTATTATTTCAAAGATTAACCCA 23572 Query 162313 GATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCTGAA 162372 |||||| ||||| || || ||||| ||| ||||| || ||||||||| | ||||| Sbjct 23573 ACTGAAATTTATAATCTCGGTGCTCAATCTCATGTTAAAGTATCATTTGATATGGCTGAA 23632 Query 162373 TACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTCTT 162432 ||||| || | ||| | ||||| ||| | | |||| || | ||| | | Sbjct 23633 TACACTGCCAATGTCGATGGTTTGGGATGTCTTCGTATTTTAGATGCTATTCGTAGTTGT 23692 Query 162433 GGTATGGAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTT 162492 ||| | ||| | || | |||||||||| ||| ||| |||||||| ||| Sbjct 23693 GGTCTTGAAAAGAAGGTTAAGTTCTACCAAGCTTCAACCTCTGAACTTTATGGTAAGGTT 23752 Query 162493 CAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCT 162552 | || || || || ||| ||||||||| | || ||||| || || |||| ||||| Sbjct 23753 CGTGAAACTCCACAATCAGAGACCACTCCATTCTACCCACGTTCACCATATGCCGTTGCC 23812 Query 162553 AAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCT 162612 |||| || || | ||||| | || || | || |||| || ||||| | Sbjct 23813 AAACAATTTGCTTATTGGATTGTTGTCAATTATCGTGAGGCTTATGGAATGAGTGCCTGT 23872 Query 162613 AGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAG 162672 | |||||| | || || |||||| || | ||||| || || || || | ||| Sbjct 23873 AACGGTATCTTGTTTAACCACGAATCTCCAAGAAGAGGTCCAACTTTTGTAACCAGAAAG 23932 Query 162673 ATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGA-AA 162731 ||| || | | | || || | |||| | |||| | || |||||| || Sbjct 23933 ATCACTCGTTTCGTTGCTCGTATCGCCCTCGGACAC-AAAGAAACCTTGTACTTGGGTAA 23991 Query 162732 CCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGAT 162791 | ||||||| |||||| ||||| ||||| ||||||||||| || ||||||||| | || Sbjct 23992 CATCAATGCTAAACGTGATTGGGGTCACGCTAAAGACTACGTCGAAGCTATGTGGCTCAT 24051 Query 162792 GCTTCAGCAAGA-GAAGCCAGATGATTATGTGATCGCAACTGGTGAGCAGTATTCTGTAA 162850 | | || ||||| ||| | ||||| ||||| || || |||||||| || | || Sbjct 24052 GTTACAACAAGACCAAGTC-GATGACTATGTCATTGCCACTGGTGAAACCCATGCAGTTC 24110 Query 162851 AGGACTTTGT---TAATGC---TGCAGCA--CCATACTTTGGGTTCAATATTGAATGGAG 162902 || ||||| || || ||| | | | ||| |||| || ||||||| Sbjct 24111 GTGAATTTGTCGAAAAAGCATTTGCTGAAATCAATA--------TCAACATCAAATGGAG 24162 Query 162903 AGGTGAAGGTCTTGATGAGTTTGGATTCTGTCTCAATACTGGTAGAACAGTT--GTAAAA 162960 |||||||||| | ||||| || | | | || || ||| |||| || || ||| Sbjct 24163 AGGTGAAGGTTTGGATGAAGAAGGTTACGATGAAAAGACCGGT--AACATTTTAGTTAAA 24220 Query 162961 GTCAATCCTAAATATTTCAGACCCGCAGAAGTAGAAACTCTT-CTCGGTGATCCCACTAA 163019 || |||| ||||| ||| | || | ||||| | | ||||| | ||||| || || || Sbjct 24221 ATCGATCCAAAATACTTCCGTCCAACTGAAGTCG-ATCTCTTATTAGGTGACCCAACCAA 24279 Query 163020 AGCAAA 163025 ||| || Sbjct 24280 AGCCAA 24285 >seq1857 Length=1661 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||||||||| ||||| |||||| ||||||||||||| Sbjct 790 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 731 Query 142852 TCCGTTATTCTCCACCA 142868 ||||||||||||||||| Sbjct 730 TCCGTTATTCTCCACCA 714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691392007452240