Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq3751 161 5e-35 seq1335 87.8 9e-13 >seq3751 Length=10017 Score = 161 bits (178), Expect = 5e-35 Identities = 281/404 (70%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 46689 TGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACA 46748 |||| |||||||||| ||||| || ||| ||| || |||| || |||||| || Sbjct 3356 TGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATT 3297 Query 46749 GCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATC 46806 ||| || |||||||| || ||||| ||||| || | | | ||||||| ||| | Sbjct 3296 CCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAG 3239 Query 46807 TGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTC 46866 || || ||||| || ||||||||||| ||||| ||| ||| || ||||| || || | Sbjct 3238 CGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGC 3179 Query 46867 TGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCA 46926 || ||| | || ||||| || | ||||| ||||||||| | || ||||| Sbjct 3178 CGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTGCCCAGTA-CGCCA 3120 Query 46927 -GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTTG 46985 | | || | ||||||| ||||| ||| ||| |||||| | || ||||| || | Sbjct 3119 AGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCG 3060 Query 46986 AGCGTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATC 47045 |||| || | | ||| ||| | | |||||||| ||||| ||||| ||||| Sbjct 3059 AGCGCGACAGCCAGGACCCGAGCCGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACG 3000 Query 47046 AGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTAC 47089 | | || ||||| || |||| |||||||||||| |||||||| Sbjct 2999 GGCTGCGGGTGTTCGCGCTGCTCAACCAGTTCCGTTTGCAGTAC 2956 Score = 161 bits (178), Expect = 5e-35 Identities = 281/404 (70%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 7100 TGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACA 7159 |||| |||||||||| ||||| || ||| ||| || |||| || |||||| || Sbjct 3356 TGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATT 3297 Query 7160 GCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATC 7217 ||| || |||||||| || ||||| ||||| || | | | ||||||| ||| | Sbjct 3296 CCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAG 3239 Query 7218 TGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTC 7277 || || ||||| || ||||||||||| ||||| ||| ||| || ||||| || || | Sbjct 3238 CGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGC 3179 Query 7278 TGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCA 7337 || ||| | || ||||| || | ||||| ||||||||| | || ||||| Sbjct 3178 CGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTGCCCAGTA-CGCCA 3120 Query 7338 -GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTTG 7396 | | || | ||||||| ||||| ||| ||| |||||| | || ||||| || | Sbjct 3119 AGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCG 3060 Query 7397 AGCGTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATC 7456 |||| || | | ||| ||| | | |||||||| ||||| ||||| ||||| Sbjct 3059 AGCGCGACAGCCAGGACCCGAGCCGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACG 3000 Query 7457 AGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTAC 7500 | | || ||||| || |||| |||||||||||| |||||||| Sbjct 2999 GGCTGCGGGTGTTCGCGCTGCTCAACCAGTTCCGTTTGCAGTAC 2956 >seq1335 Length=14169 Score = 87.8 bits (96), Expect = 9e-13 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 65760 GTAGTTAGTGTTATCAGATATCACCAATAATTTATCGGGGATCATCTGCAGCCTTTTTAC 65819 |||| | |||||||||| || |||| || ||||| ||||| ||||| | ||||| Sbjct 5721 GTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTAC 5662 Query 65820 GTATATTTTATCATCAAAGCCAAAGACATAGATGCCATCACCATCGAACTGGTTGATGCT 65879 | | | || || | ||| ||||||| |||||||| ||||| || | | Sbjct 5661 ATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGT 5602 Query 65880 TATATCGACAAAAATAAGATCTCCCGGTTCAATTGTTGGCGCCATGCTGTCACCGCGCAC 65939 ||||| || || | ||||| || ||||| || ||| | |||||||||||||||||| Sbjct 5601 GATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCAC 5542 Query 65940 GTTAAT 65945 |||||| Sbjct 5541 GTTAAT 5536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247451752807504