Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 3e-15 >seq1 Length=19924566 Score = 87.8 bits (96), Expect = 3e-15 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | |||| || |||||||| |||| ||||| ||| Sbjct 19916864 GTACAAAGGGCAGGGACGTATTCATCTCGAG-TTAATGACTCGATATTACAAGGAA-TTC 19916807 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC 95 |||||| || || || |||| |||| || |||||| Sbjct 19916806 CTCGTTCAAAACAAATAATTCCAATCATTTATCCC 19916772 Score = 78.8 bits (86), Expect = 1e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || |||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 19916647 CATTGTAGCGCGCGTGCGGCCCAAGATGTCTAAGGGCATCACAGACCTGTTATTGC 19916592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999992715