Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1 367 4e-99 >seq1 Length=19924566 Score = 367 bits (406), Expect = 4e-99 Identities = 393/513 (77%), Gaps = 11/513 (2%) Strand=Plus/Minus Query 14 TCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAAC 73 |||||| ||| ||||||| ||| ||||| | ||| ||||||||||||||| | |||| Sbjct 19920171 TCTACATGAGGTTTCTGTCCTCATTGAGTTCATCTTTGGACACCTGCGTTATCTTGTAAC 19920112 Query 74 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC 133 ||||||||||||||||||||||||||| || | | ||| || | || || Sbjct 19920111 AGATGTGCCGCCCCAGCCAAACTCCCCGTCTATCTCTTTCAATCGCCTGTTTCAACC--- 19920055 Query 134 GAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGC--TTCATTGATTAAG 191 |||| |||| | |||| || || ||| || | || | | | || Sbjct 19920054 GAAGTT--TTAATGTTTTTAAATTAATGGAAAAT-CCATTTTAACATTTAACGAAATGAG 19919998 Query 192 TaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTA 251 | ||| | | || |||||||| ||| | | | || | ||||||| || ||| Sbjct 19919997 TGAAATAGTATTTCTAGTGGTGGTATTACACGTTTGACAAA--GTCTCCCACCTAGCCTA 19919940 Query 252 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCC 311 ||| || |||||||| | | |||||||||||||||||||||||||||||| Sbjct 19919939 TACCAAAAAATCGATTTCACATGATAA-ATTAGAGTCAAGCTCAACAGGGTCTTCTTTCC 19919881 Query 312 CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 371 |||| | | | |||||||||||||||| |||||||||| |||||| | |||||||||| Sbjct 19919880 CCGCCGTTCCAATCAAGCCCGTTCCCTTGACTGTGGTTTCACTAGATTGCAGATAGGGAC 19919821 Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 19919820 AGTGGGAATCACGGTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 19919761 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||||||||||||||||||||||||||||| |||||||||| | |||||| | || Sbjct 19919760 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTAACCCGCGCTTAAGTAAATTTCATTACC 19919701 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACATT 524 ||||||||||||||||||||||||||||||||| Sbjct 19919700 TTGACATTCAGAGCACTGGGCAGAAATCACATT 19919668 Score = 98.7 bits (108), Expect = 3e-18 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 14 TCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAAC 73 || ||| ||| ||||||| ||| ||||| | ||| ||||||||||||||| | |||| Sbjct 18223835 TCAACATGAGGTTTCTGTCCTCATTGAGTTCATCTTTGGACACCTGCGTTATCTTGTAAC 18223894 Query 74 AGATGTGCCGCCCCAGCCAAACTCCCC 100 ||||||||||||||||||||||||||| Sbjct 18223895 AGATGTGCCGCCCCAGCCAAACTCCCC 18223921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199983648