Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entamoeba_20histolytica_20[genbank_20GCA_5F001662325.1_202016-05-31] 1 sequences; 19,924,566 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 3e-16 >seq1 Length=19924566 Score = 98.7 bits (108), Expect = 3e-16 Identities = 217/318 (68%), Gaps = 23/318 (7%) Strand=Plus/Minus Query 1699 GAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGAATCTGGT 1758 ||| | ||||| ||||| ||||| ||||| ||||||||||| || |||| | ||| Sbjct 4111393 GAAATTCTTGATTCACGTGGTAATCCAACCATTGAAGTAGAAATTACTACTGGAAAAGGT 4111334 Query 1759 GCATTCGG-TCGCGGTATG-GTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCAGTAG 1816 ||| | || ||| ||||| ||||||||||| ||||| | || |||||||| | Sbjct 4111333 ATGTTCAGATC-----ATGTGTTCCATCAGGAGCATCTACTGGAGTTCATGAAGCAGTTG 4111279 Query 1817 AACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGTTGATA 1876 ||||||||||||| ||||| | || || || || || || || ||||| | Sbjct 4111278 AACTTCGTGATGGAGACAAGAAAAGATATGGAGGAAAAGGAGTTCTTAAGGCTGTTGAAA 4111219 Query 1877 ACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCG-ACGTACGTGATCAACAAGGT 1935 | || |||| | |||||| || || || || || | | | |||| | ||| | | Sbjct 4111218 ATGTTAACACCATTATTG--GACCAGCTCTTC---TTGGCAAGAACGTTTTGAACCAAGC 4111164 Query 1936 A----TTGACCGCGCAATGATCGCT---CTTGACGGTACTCCAAACAAAGGTAAACTTGG 1988 | |||| | |||||| | ||||| || ||| |||||||| |||||||| Sbjct 4111163 AGAACTTGA---TGAAATGATGATTAAACTTGATGGAACTAACAACAAAGGAAAACTTGG 4111107 Query 1989 TGCCAACGCTATTCTTGG 2006 || || ||||||||||| Sbjct 4111106 AGCTAATGCTATTCTTGG 4111089 Score = 80.6 bits (88), Expect = 8e-11 Identities = 112/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 2679 TAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTAT 2738 |||||| | ||||| |||||||| ||||| |||||| | |||||||| || | |||| Sbjct 4110398 TAACTCTGTTCTTATTAAAGTTAATCAAATTGGTACTCTTACTGAAACATTCAAGACTAT 4110339 Query 2739 CGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGA 2798 | ||||| ||||| |||| || | | ||||||| | || ||||||||||| Sbjct 4110338 TAAGATGGCACAAGAAAAAGGATGGGGAGTTATGGCATCACACAGATCTGGTGAAACTGA 4110279 Query 2799 AGATTCAACAATCGCTGATATTGCAGTTGCAACTAAC 2835 |||| | || |||||| ||| |||| | |||| Sbjct 4110278 AGATACTTTCATTGCTGATCTTGTTGTTGGACTTAAC 4110242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156038398147044