Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq8107 226 4e-57 seq3229 226 4e-57 seq3885 221 2e-55 seq557 203 5e-50 seq8011 199 6e-49 seq4292 194 3e-47 seq7942 114 2e-23 seq1173 102 1e-19 >seq8107 Length=10988 Score = 226 bits (250), Expect = 4e-57 Identities = 194/232 (84%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| | ||||| |||||||||||||||| | Sbjct 9910 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GTTGACTTGCGCTTACTAGGAATT-C 9853 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | || || |||| |||| ||| ||||||| |||||| |||||||| | || Sbjct 9852 CTCGTTCACGATAAATAATTACAATTATCGATCCCCAGCACGATACGATTTCAAAAGTTT 9793 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AG-ACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| ||| |||| |||| | || ||||||||| |||||||||||||||||| Sbjct 9792 ACCCAATCCTTTCGGATCAGGTCTTCAGTACTCGTTGATCGTATCAGTGTAGCGCGCGTG 9733 Query 178 CGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 | ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 9732 CAGCCCAGAACATCTAAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 9681 >seq3229 Length=21241 Score = 226 bits (250), Expect = 4e-57 Identities = 194/232 (84%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| | ||||| |||||||||||||||| | Sbjct 11830 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GTTGACTTGCGCTTACTAGGAATT-C 11773 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | || || |||| |||| ||| ||||||| |||||| |||||||| | || Sbjct 11772 CTCGTTCACGATAAATAATTACAATTATCGATCCCCAGCACGATACGATTTCAAAAGTTT 11713 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AG-ACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| ||| |||| |||| | || ||||||||| |||||||||||||||||| Sbjct 11712 ACCCAATCCTTTCGGATCAGGTCTTCAGTACTCGTTGATCGTATCAGTGTAGCGCGCGTG 11653 Query 178 CGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 | ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 11652 CAGCCCAGAACATCTAAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 11601 >seq3885 Length=13919 Score = 221 bits (244), Expect = 2e-55 Identities = 193/232 (83%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| | ||||| |||||||||||||||| | Sbjct 2801 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GTTGACTTGCGCTTACTAGGAATT-C 2858 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | || || |||| |||| ||| ||||||| |||||| |||||||| | || Sbjct 2859 CTCGTTCACGATAAATAATTACAATTATCGATCCCCAGCACGATACGATTTCAAAAGTTT 2918 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AG-ACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| ||| | || |||| | || ||||||||| |||||||||||||||||| Sbjct 2919 ACCCAATCCTTTTGGATCAGGTCTTCAGTACTCGTTGATCGTATCAGTGTAGCGCGCGTG 2978 Query 178 CGGCCCAGAACATCT-AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 | ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2979 CAGCCCAGAACATCTAAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3030 >seq557 Length=13049 Score = 203 bits (224), Expect = 5e-50 Identities = 189/232 (81%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| ||| |||| | ||||| |||||||||||||||| | Sbjct 8725 GTACAAAGGGCAGGGACATAATCAGCGCAAGCT-GTTGACTTGCGCTTACTAGGAATT-C 8782 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 || ||| | || || |||| |||| ||| ||||||| |||||| |||||||| | || Sbjct 8783 CTTGTTCATGATAAATAATTACAATTATCGATCCCCAGCACGATATGATTTCAAAAGTTT 8842 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AG-ACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| ||| | || | |||| | || ||| ||||| |||||||||| ||| ||| Sbjct 8843 ACCCAATCCTTTTGGACCAGGTCTTCAGTACTTGTTGATCGTATCAGTGTAGTGCGTGTG 8902 Query 178 CGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 | ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 8903 CAGCCCAGAACATCTAAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 8954 >seq8011 Length=973 Score = 199 bits (220), Expect = 6e-49 Identities = 188/232 (81%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| ||| |||| | ||||| |||||||||||||||| | Sbjct 371 GTACAAAGGGCAGGGACATAATCAGCGCAAGCT-GTTGACTTGCGCTTACTAGGAATT-C 314 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 || ||| | || || |||| |||| || ||||||| || ||| |||||||| | || Sbjct 313 CTTGTTCATGATAAATAATTACAATTATTGATCCCCAGCATGATACGATTTCAAAAGTTT 254 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AG-ACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| ||| | || | |||| | || |||| |||| | |||||||||| || |||| Sbjct 253 ACCCAATCCTTTTGGACCAGGTCTTCAGTACTCATTGATCATATCAGTGTAGTGCACGTG 194 Query 178 CGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 | ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 193 CAGCCCAGAACATCTAAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 142 >seq4292 Length=2934 Score = 194 bits (214), Expect = 3e-47 Identities = 187/232 (81%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| ||| |||| | ||||| |||||||||||||||| | Sbjct 2205 GTACAAAGGGCAGGGACATAATCAGCGCAAGCT-GTTGACTTGCGCTTACTAGGAATT-C 2148 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | | || |||| |||| || ||||||| ||| || |||||||| | || Sbjct 2147 CTCGTTCACAATAAATAATTACAATTATTGATCCCCAGCACAATATGATTTCAAAAGTTT 2088 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AG-ACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| ||| | || | |||| | || ||| ||||| | |||||||||| | ||||| Sbjct 2087 ACCCAATCCTTTTGGACCAGGTCTTCAGTACTTGTTGATTGTATCAGTGTAGTGTGCGTG 2028 Query 178 CGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 | ||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 2027 CAGCCCAGAACATCTAAAGGGCATCACCGACCTGTTATTGCCTCAAACTTCC 1976 >seq7942 Length=1669 Score = 114 bits (126), Expect = 2e-23 Identities = 124/158 (78%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| ||| ||| || ||||| |||||||||||||| ||| Sbjct 1506 GTACAAAGGGCAGGGACATAATCAGCGCAAGC-TGTTGACTTGCGCTTACTAGGAA-TTC 1563 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTC-AAAGATT 119 ||| || | || || |||| |||| ||| ||||||| ||| || ||||| |||| || Sbjct 1564 CTCATTCACGATAAATAATTACAATTATCGATCCCCAGCACAATACGATTTCAAAAGTTT 1623 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AG-ACTCGTTGA 155 |||| ||| |||| | |||| | || ||||||||| Sbjct 1624 ACCCAATCCTTTCGGACCAGGTCTTCAGTACTCGTTGA 1661 >seq1173 Length=5803 Score = 102 bits (112), Expect = 1e-19 Identities = 84/100 (84%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||| || ||||| |||||||||||||| ||| Sbjct 4575 GTACAAAGGGCAGGGACGTAATCAGCGCAAGC-TGTTGACTTGCGCTTACTAGGAA-TTC 4518 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCA 100 |||||| | || || |||| |||| ||| ||||||| || Sbjct 4517 CTCGTTCACGATAAATAATTACAATTATCGATCCCCAGCA 4478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751932038235