Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq8107 125 4e-27 seq3885 125 4e-27 seq3229 125 4e-27 seq3918 93.3 2e-17 seq4292 91.5 8e-17 >seq8107 Length=10988 Score = 125 bits (138), Expect = 4e-27 Identities = 108/132 (82%), Gaps = 15/132 (11%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTC----------AAAAT-- 47 |||||||||||||| |||||||||||||||||| || |||| ||||| Sbjct 9272 GAACCCAAAGACTTATGATTTCTCGTAAGGTGCTGAAGGAGTTTTCCTACGTTAAAATAG 9213 Query 48 GATAA--CATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCT 105 ||||| |||| || |||||| |||||||||||||| |||||||||||||||||||||| Sbjct 9212 GATAATACATCTTCCAATCCCTGGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCT 9153 Query 106 GATCGTCTTCGA 117 |||||||||||| Sbjct 9152 GATCGTCTTCGA 9141 >seq3885 Length=13919 Score = 125 bits (138), Expect = 4e-27 Identities = 108/132 (82%), Gaps = 15/132 (11%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTC----------AAAAT-- 47 |||||||||||||| |||||||||||||||||| || |||| ||||| Sbjct 3439 GAACCCAAAGACTTATGATTTCTCGTAAGGTGCTGAAGGAGTTTTCCTACATTAAAATAG 3498 Query 48 GATAA--CATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCT 105 ||||| |||| || |||||| |||||||||||||| |||||||||||||||||||||| Sbjct 3499 GATAATACATCTTCCAATCCCTGGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCT 3558 Query 106 GATCGTCTTCGA 117 |||||||||||| Sbjct 3559 GATCGTCTTCGA 3570 >seq3229 Length=21241 Score = 125 bits (138), Expect = 4e-27 Identities = 108/132 (82%), Gaps = 15/132 (11%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTC----------AAAAT-- 47 |||||||||||||| |||||||||||||||||| || |||| ||||| Sbjct 11192 GAACCCAAAGACTTATGATTTCTCGTAAGGTGCTGAAGGAGTTTTCCTACATTAAAATAG 11133 Query 48 GATAA--CATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCT 105 ||||| |||| || |||||| |||||||||||||| |||||||||||||||||||||| Sbjct 11132 GATAATACATCTTCCAATCCCTGGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCT 11073 Query 106 GATCGTCTTCGA 117 |||||||||||| Sbjct 11072 GATCGTCTTCGA 11061 >seq3918 Length=2518 Score = 93.3 bits (102), Expect = 2e-17 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 52 ACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGT 111 ||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 45 ACATCTTCCAATCCCTGGTCGGCATAGTTTGTGGTTAAGACTACGACGGTATCTGATCGT 104 Query 112 CTTCGA 117 |||||| Sbjct 105 CTTCGA 110 >seq4292 Length=2934 Score = 91.5 bits (100), Expect = 8e-17 Identities = 98/130 (75%), Gaps = 15/130 (12%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTC------------AAAAT 47 |||||||||||||| |||||||| ||||||||| || ||| || | Sbjct 1567 GAACCCAAAGACTTATGATTTCTTGTAAGGTGCTGAAGAAGTTTTCCTACGTTAAAACAG 1508 Query 48 GATAA--CATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCT 105 ||||| |||| || |||||| || ||||||||||| |||||||||||| || |||||| Sbjct 1507 GATAATACATCTTCCAATCCCTGGTTGGCATAGTTTATGGTTAAGACTACAACAGTATCT 1448 Query 106 GATCGTCTTC 115 ||| |||||| Sbjct 1447 GATTGTCTTC 1438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278375651310