Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3885 170 4e-40 seq8107 165 1e-38 seq3229 165 1e-38 >seq3885 Length=13919 Score = 170 bits (188), Expect = 4e-40 Identities = 207/282 (73%), Gaps = 39/282 (14%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC--TTTGCTC-------GAATAC-A 123 |||||||||| |||||||||||||||| ||| || |||| | |||||| | Sbjct 3851 TTTACTTTGAGTAAATTAGAGTGTTCAAGGCAAGCAAATTTGTTTCTGCAATGAATACTA 3792 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT---GTTGGTTTCTAG----- 175 ||||||||| ||||| ||| ||||| || ||||| ||| |||||||||||| Sbjct 3791 TTAGCATGGGATAATGGAACAGGACATGTA-TTCTAGTTTTCCGTTGGTTTCTAGAATTT 3733 Query 176 --------------GACCGCCG-----TAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 || | || |||||||||| ||||| ||| ||||| | || Sbjct 3732 TTAGTCACTCTTTGGAGTGGCGAAGTGTAATGATTAAAAGGGACAGTTGGGGGCATTCGT 3673 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||| || Sbjct 3672 ATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTTCTGCGAAAGCATT 3613 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| ||||||||||||||||| |||||||||||||||| Sbjct 3612 TGTCAAAGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 3572 >seq8107 Length=10988 Score = 165 bits (182), Expect = 1e-38 Identities = 206/282 (73%), Gaps = 39/282 (14%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC--TTTGCTC-------GAATAC-A 123 |||||||||| |||||||||||||||| ||| || |||| | |||||| | Sbjct 8860 TTTACTTTGAGTAAATTAGAGTGTTCAAGGCAAGCAAATTTGTTTCTGCAATGAATACTA 8919 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT---GTTGGTTTCTAG----- 175 ||||||||| ||||| ||| ||||| | ||||| ||| |||||||||||| Sbjct 8920 TTAGCATGGGATAATGGAACAGGACACGTA-TTCTAGTTTTCCGTTGGTTTCTAGAATTT 8978 Query 176 --------------GACCGCCG-----TAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 || | || |||||||||| ||||| ||| ||||| | || Sbjct 8979 TTAGTCACTCTTAGGAGTGGCGAAGTGTAATGATTAAAAGGGACAGTTGGGGGCATTCGT 9038 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||| || Sbjct 9039 ATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTTCTGCGAAAGCATT 9098 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| ||||||||||||||||| |||||||||||||||| Sbjct 9099 TGTCAAAGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 9139 >seq3229 Length=21241 Score = 165 bits (182), Expect = 1e-38 Identities = 206/282 (73%), Gaps = 39/282 (14%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC--TTTGCTC-------GAATAC-A 123 |||||||||| |||||||||||||||| ||| || |||| | |||||| | Sbjct 10780 TTTACTTTGAGTAAATTAGAGTGTTCAAGGCAAGCAAATTTGTTTCTGCAATGAATACTA 10839 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT---GTTGGTTTCTAG----- 175 ||||||||| ||||| ||| ||||| | ||||| ||| |||||||||||| Sbjct 10840 TTAGCATGGGATAATGGAACAGGACACGTA-TTCTAGTTTTCCGTTGGTTTCTAGAATTT 10898 Query 176 --------------GACCGCCG-----TAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 || | || |||||||||| ||||| ||| ||||| | || Sbjct 10899 TTAGTCACTCTTTGGAGTGGCGAAGTGTAATGATTAAAAGGGACAGTTGGGGGCATTCGT 10958 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||| || Sbjct 10959 ATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTTCTGCGAAAGCATT 11018 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| ||||||||||||||||| |||||||||||||||| Sbjct 11019 TGTCAAAGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 11059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915114620992