Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3905 185 4e-44 seq3229 178 5e-42 seq557 159 1e-36 seq3885 80.6 1e-12 >seq3905 Length=18311 Score = 185 bits (204), Expect = 4e-44 Identities = 125/140 (89%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 |||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| Sbjct 11418 GATTTGAGTAAGAGCATATCTGTTGGGACCCGAAAGATGGTGAACTATGGGTGAGTAGGG 11477 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||| |||||||||||||| |||||||||| |||| | ||| ||||||||||| ||||| Sbjct 11478 CGAAGTCAGAGGAAACTCTGATGGAGGCTCGAAGCGATGCTGACGTGCAAATCGCTCGTC 11537 Query 664 AAATTTGGGTATAGGGGCGA 683 ||| ||| ||||||||||| Sbjct 11538 AAACTTGCCTATAGGGGCGA 11557 Score = 178 bits (196), Expect = 5e-42 Identities = 145/175 (83%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||||| |||||| ||||| | ||||||| || ||| ||||||| Sbjct 10845 GAGTCGGGTTGCTTGGGATTGCAGCCTAAAATGCGTGGTAAATCTCACGTAACGCTAAAT 10904 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| | |||||||||||||| |||||||| |||| ||||||| |||||| |||||| || Sbjct 10905 ATTGACGAGAGACCGATAGCGAACAAGTAGTGTGAACGAAAGAAGAAAAGAACTTTGAAA 10964 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTT 214 |||||| | ||||| | |||||||||| |||||||||||||| |||||| ||| Sbjct 10965 AGAGAG-TGAAAAGTCCTTGAAATTGTTAAAAGGGAAGCGCTTAAAACCAGTCTT 11018 Score = 80.6 bits (88), Expect = 1e-12 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 393 AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGT 451 ||||||| ||| || ||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 11214 AATGGTTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAAATATGCGAGT 11272 >seq3229 Length=21241 Score = 178 bits (196), Expect = 5e-42 Identities = 145/175 (83%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||||| |||||| ||||| | ||||||| || ||| ||||||| Sbjct 13240 GAGTCGGGTTGCTTGGGATTGCAGCCTAAAATGCGTGGTAAATCTCACGTAACGCTAAAT 13299 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| | |||||||||||||| |||||||| |||| ||||||| |||||| |||||| || Sbjct 13300 ATTGACGAGAGACCGATAGCGAACAAGTAGTGTGAACGAAAGAAGAAAAGAACTTTGAAA 13359 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTT 214 |||||| | ||||| | |||||||||| |||||||||||||| |||||| ||| Sbjct 13360 AGAGAG-TGAAAAGTCCTTGAAATTGTTAAAAGGGAAGCGCTTAAAACCAGTCTT 13413 Score = 140 bits (154), Expect = 1e-30 Identities = 110/132 (83%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||||| |||||| ||||| | ||||||| || ||| ||||||| Sbjct 13010 GAGTCGGGTTGCTTGGGATTGCAGCCTAAAATGCGTGGTAAATCTCACGTAACGCTAAAT 13069 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| | |||||||||||||| |||||||| |||| ||||||| |||||| |||||| || Sbjct 13070 ATTGACGAGAGACCGATAGCGAACAAGTAGTGTGAACGAAAGAAGAAAAGAACTTTGAAA 13129 Query 160 AGAGAGTTAAAA 171 ||||||| |||| Sbjct 13130 AGAGAGTGAAAA 13141 >seq557 Length=13049 Score = 159 bits (176), Expect = 1e-36 Identities = 118/138 (86%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 |||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||| Sbjct 6837 GATTTGAGTAAGAGCATATCTGTTGGGACCTGAAAGATGGTGAACTATGGGTGAGTAGGG 6778 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||| |||||||||||||| |||||||| | ||| | ||| |||||||||| | ||| Sbjct 6777 CGAAGTCAGAGGAAACTCTGATGGAGGCTTGAAGCAATGCTGATGTGCAAATCGCTTGTC 6718 Query 664 AAATTTGGGTATAGGGGC 681 ||| ||| ||||||||| Sbjct 6717 AAACTTGCCTATAGGGGC 6700 Score = 154 bits (170), Expect = 6e-35 Identities = 140/175 (80%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| |||||| |||||| ||||| | ||||||| || | ||| |||||| Sbjct 7536 GAGTCAGGTTGCTTGGGATTGCAGCCTAAAATGCGTGGTAAATCTCATGTAACACTAAAT 7477 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| | ||||||| ||||| |||||||| |||| | ||||| |||||| |||||| || Sbjct 7476 ATTGACAAGAGACCAATAGCAAACAAGTAGTGTGAACAAAAGAAGAAAAGAACTTTGAAA 7417 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTT 214 ||||||| |||| | | |||||||||| ||||||||||| || |||||| ||| Sbjct 7416 AGAGAGTGAAAAGTC-CTTGAAATTGTTAAAAGGGAAGCGTTTAAAACCAGTCTT 7363 >seq3885 Length=13919 Score = 80.6 bits (88), Expect = 1e-12 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 393 AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGT 451 ||||||| ||| || ||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1371 AATGGTTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAAATATGCGAGT 1313 Score = 78.8 bits (86), Expect = 4e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| |||||| |||||| ||||||||| |||| | | |||||||||| ||||||||||| Sbjct 1766 AGAAGAAAAGAACTTTGAAAAGAGAGTGAAAAGTC-CTTGAAATTGTTAAAAGGGAAGCG 1708 Query 200 CTTGCAACCAGACTT 214 ||| |||||| ||| Sbjct 1707 CTTAAAACCAGTCTT 1693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079799892950