Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq8107 188 1e-45 seq3885 188 1e-45 seq3229 188 1e-45 seq557 185 1e-44 seq4292 179 6e-43 seq8011 125 1e-26 >seq8107 Length=10988 Score = 188 bits (208), Expect = 1e-45 Identities = 112/117 (96%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9516 CTAATTAGCAGGCTGAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 9457 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 9456 ACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTCTCAATCTGTC 9400 Score = 134 bits (148), Expect = 2e-29 Identities = 93/104 (89%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 9749 TCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAAGGGCATCACAGACCTGTTATTGCCT 9690 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118 ||||||||| |||| | | |||| |||||||||||||| || Sbjct 9689 CAAACTTCCCTTGGTTAAACACCAAGTGTCCCTCTAAGAAGTCA 9646 >seq3885 Length=13919 Score = 188 bits (208), Expect = 1e-45 Identities = 112/117 (96%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3195 CTAATTAGCAGGCTGAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 3254 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 3255 ACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTCTCAATCTGTC 3311 Score = 134 bits (148), Expect = 2e-29 Identities = 93/104 (89%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 2962 TCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAAGGGCATCACAGACCTGTTATTGCCT 3021 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118 ||||||||| |||| | | |||| |||||||||||||| || Sbjct 3022 CAAACTTCCCTTGGTTAAACACCAAGTGTCCCTCTAAGAAGTCA 3065 >seq3229 Length=21241 Score = 188 bits (208), Expect = 1e-45 Identities = 112/117 (96%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11436 CTAATTAGCAGGCTGAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 11377 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 11376 ACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTCTCAATCTGTC 11320 Score = 134 bits (148), Expect = 2e-29 Identities = 93/104 (89%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 11669 TCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAAGGGCATCACAGACCTGTTATTGCCT 11610 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118 ||||||||| |||| | | |||| |||||||||||||| || Sbjct 11609 CAAACTTCCCTTGGTTAAACACCAAGTGTCCCTCTAAGAAGTCA 11566 >seq557 Length=13049 Score = 185 bits (204), Expect = 1e-44 Identities = 111/117 (95%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9119 CTAATTAGCAGGCTGAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 9178 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 9179 ACTAAGAATGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTCTCAATCTGTC 9235 Score = 125 bits (138), Expect = 1e-26 Identities = 91/104 (88%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCT 74 ||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 8886 TCAGTGTAGTGCGTGTGCAGCCCAGAACATCTAAAGGGCATCACAGACCTGTTATTGCCT 8945 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118 ||||||||| |||| | | |||| |||||||||||||| || Sbjct 8946 CAAACTTCCCTTGGTTAAACACCAAGTGTCCCTCTAAGAAGTCA 8989 >seq4292 Length=2934 Score = 179 bits (198), Expect = 6e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | |||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1811 CTAATTAGCAGGCTGAGGTCTTGTTCGTTATCAGAATTAACCAGACAAATCACTCCACCA 1752 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1751 ACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTCTCAATCTGTC 1695 Score = 122 bits (134), Expect = 1e-25 Identities = 90/104 (87%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCT 74 ||||||||| | |||||| ||||||||||||||| ||||||||| ||||||||||||||| Sbjct 2044 TCAGTGTAGTGTGCGTGCAGCCCAGAACATCTAAAGGGCATCACCGACCTGTTATTGCCT 1985 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118 ||||||||| |||| | | |||| |||||||||||||| || Sbjct 1984 CAAACTTCCCTTGGTTAAACACCAAGTGTCCCTCTAAGAAGTCA 1941 >seq8011 Length=973 Score = 125 bits (138), Expect = 1e-26 Identities = 91/104 (88%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCT 74 ||||||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 210 TCAGTGTAGTGCACGTGCAGCCCAGAACATCTAAAGGGCATCACAGACCTGTTATTGCCT 151 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118 ||||||||| |||| | | |||| |||||||||||||| || Sbjct 150 CAAACTTCCCTTGGTTAAACACCAAGTGTCCCTCTAAGAAGTCA 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796727989449