Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3905 367 2e-99 seq3229 367 2e-99 seq1445 343 3e-92 seq9163 80.6 5e-13 >seq3905 Length=18311 Score = 367 bits (406), Expect = 2e-99 Identities = 242/268 (90%), Gaps = 5/268 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 13783 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 13724 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| Sbjct 13723 TTAGTGGGTGAACAATCCAACACTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGA 13664 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 13663 CATCGAAGGATCAAAAAGCAACGTCGCTATGAGCGCTTGGCTGCCACAAGCCAGTTATCC 13604 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC-----GAGGGACTAAAGGATCG 265 ||||||||||||||||| ||||||||| | |||| || | ||||||||||| Sbjct 13603 CTGTGGTAACTTTTCTGACACCTCTAGATTGAAATCTCCAAAATAAATTCTAAAGGATCG 13544 Query 266 ATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||| |||||| |||||||||| Sbjct 13543 ATAGGCCATGCTTTCACAGTTTGTATTC 13516 >seq3229 Length=21241 Score = 367 bits (406), Expect = 2e-99 Identities = 242/268 (90%), Gaps = 5/268 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 17066 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 17007 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| Sbjct 17006 TTAGTGGGTGAACAATCCAACACTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGA 16947 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 16946 CATCGAAGGATCAAAAAGCAACGTCGCTATGAGCGCTTGGCTGCCACAAGCCAGTTATCC 16887 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC-----GAGGGACTAAAGGATCG 265 ||||||||||||||||| ||||||||| | |||| || | ||||||||||| Sbjct 16886 CTGTGGTAACTTTTCTGACACCTCTAGATTGAAATCTCCAAAATAAATTCTAAAGGATCG 16827 Query 266 ATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||| |||||| |||||||||| Sbjct 16826 ATAGGCCATGCTTTCACAGTTTGTATTC 16799 >seq1445 Length=9778 Score = 343 bits (380), Expect = 3e-92 Identities = 237/268 (88%), Gaps = 5/268 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1189 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 1248 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||| | Sbjct 1249 TTAGTGGGTGAACAATCCAACACTTGGCAAATTCTGCTTCACAATGATAGGAAGAGCCAA 1308 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1309 CACCGAAGGATCAAAAAGCAACGTTGCTATGAGCGCTTGGCTGCCACAAGCCAGTTATCC 1368 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC-----GAGGGACTAAAGGATCG 265 ||||||||||||||||| ||||||||| | |||| || | |||||||||| Sbjct 1369 CTGTGGTAACTTTTCTGACACCTCTAGATTGAAATCTCCAAAATAAATTCTAAAGGATCA 1428 Query 266 ATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||| |||||| |||||||||| Sbjct 1429 ATAGGCCATGCTTTCACAGTTTGTATTC 1456 Score = 174 bits (192), Expect = 3e-41 Identities = 135/161 (84%), Gaps = 5/161 (3%) Strand=Plus/Plus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 |||||| | |||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1675 AGGAAGGGGNGACATCGAAGGATCAAAAAGCAACGTTGCTATGAGTGCTTGGCTGCCACA 1734 Query 199 AGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC-----GAGGG 253 ||||||||||||||||||||||||||||| ||||||||| | |||| || | Sbjct 1735 AGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGATTGAAATCTCCAAAATAAAT 1794 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||||||| |||||||| |||||| ||||||||||| Sbjct 1795 TCTAAAGGATCAATAGGCCATGCTTTCACAGTTTGTATTCA 1835 >seq9163 Length=1520 Score = 80.6 bits (88), Expect = 5e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 ||||||||||||||| | ||||||||||||||||| ||||||||||||||||| || Sbjct 891 AACTAACCTGTCTCACAATGGTCTAAACCCAGCTCATGTTCCCTATTAGTGGGTAAA 835 Score = 77.0 bits (84), Expect = 6e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 ||||||||||||||| | |||||||||| |||||| ||||||||||||||||| || Sbjct 455 AACTAACCTGTCTCACAATGGTCTAAACCTAGCTCATGTTCCCTATTAGTGGGTAAA 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854320293024