Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq8107 235 1e-59 seq3229 235 1e-59 seq3885 232 1e-58 seq557 214 3e-53 seq8011 205 2e-50 seq4292 205 2e-50 seq7942 118 2e-24 seq1173 107 4e-21 >seq8107 Length=10988 Score = 235 bits (260), Expect = 1e-59 Identities = 211/261 (81%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | | || | |||||||||||||||||||||||||||| Sbjct 9649 CTTCTTAGAGGGACACTTGGTGTTTAACCAAGGGAAGTTTGAGGCAATAACAGGTCTGTG 9708 Query 131 ATGCCCTT-AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--A 187 |||||||| ||||||||||||| |||||||||||||||||| | |||||||| | | Sbjct 9709 ATGCCCTTTAGATGTTCTGGGCTGCACGCGCGCTACACTGATACGATCAACGAGTACTGA 9768 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 |||| ||| |||| ||||||| ||| | ||| | ||||||||||||| || | Sbjct 9769 AGACCTGATCCGAAAGGATTGGGTAAACTTTTGAAATCGTATCGTGCTGGGGATCGATAA 9828 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||| || | |||||||||| |||||||||||| |||| |||| ||| || Sbjct 9829 TTGTAATTATTTATCGTGAACGAGGAATTCCTAGTAAGCGCAAGTCAACAGCTTGCGCTG 9888 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 9889 ATTACGTCCCTGCCCTTTGTA 9909 >seq3229 Length=21241 Score = 235 bits (260), Expect = 1e-59 Identities = 211/261 (81%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | | || | |||||||||||||||||||||||||||| Sbjct 11569 CTTCTTAGAGGGACACTTGGTGTTTAACCAAGGGAAGTTTGAGGCAATAACAGGTCTGTG 11628 Query 131 ATGCCCTT-AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--A 187 |||||||| ||||||||||||| |||||||||||||||||| | |||||||| | | Sbjct 11629 ATGCCCTTTAGATGTTCTGGGCTGCACGCGCGCTACACTGATACGATCAACGAGTACTGA 11688 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 |||| ||| |||| ||||||| ||| | ||| | ||||||||||||| || | Sbjct 11689 AGACCTGATCCGAAAGGATTGGGTAAACTTTTGAAATCGTATCGTGCTGGGGATCGATAA 11748 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||| || | |||||||||| |||||||||||| |||| |||| ||| || Sbjct 11749 TTGTAATTATTTATCGTGAACGAGGAATTCCTAGTAAGCGCAAGTCAACAGCTTGCGCTG 11808 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 11809 ATTACGTCCCTGCCCTTTGTA 11829 >seq3885 Length=13919 Score = 232 bits (256), Expect = 1e-58 Identities = 210/261 (80%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | | || | |||||||||||||||||||||||||||| Sbjct 3062 CTTCTTAGAGGGACACTTGGTGTTTAACCAAGGGAAGTTTGAGGCAATAACAGGTCTGTG 3003 Query 131 ATGCCCTT-AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--A 187 |||||||| ||||||||||||| |||||||||||||||||| | |||||||| | | Sbjct 3002 ATGCCCTTTAGATGTTCTGGGCTGCACGCGCGCTACACTGATACGATCAACGAGTACTGA 2943 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 |||| || |||| ||||||| ||| | ||| | ||||||||||||| || | Sbjct 2942 AGACCTGATCCAAAAGGATTGGGTAAACTTTTGAAATCGTATCGTGCTGGGGATCGATAA 2883 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||| || | |||||||||| |||||||||||| |||| |||| ||| || Sbjct 2882 TTGTAATTATTTATCGTGAACGAGGAATTCCTAGTAAGCGCAAGTCAACAGCTTGCGCTG 2823 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 2822 ATTACGTCCCTGCCCTTTGTA 2802 >seq557 Length=13049 Score = 214 bits (236), Expect = 3e-53 Identities = 206/261 (79%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | | || | |||||||||||||||||||||||||||| Sbjct 8986 CTTCTTAGAGGGACACTTGGTGTTTAACCAAGGGAAGTTTGAGGCAATAACAGGTCTGTG 8927 Query 131 ATGCCCTT-AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--A 187 |||||||| ||||||||||||| |||| ||| ||||||||| | |||| ||| | | Sbjct 8926 ATGCCCTTTAGATGTTCTGGGCTGCACACGCACTACACTGATACGATCAACAAGTACTGA 8867 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 |||| | || |||| ||||||| ||| | ||| | ||||||||||||| || | Sbjct 8866 AGACCTGGTCCAAAAGGATTGGGTAAACTTTTGAAATCATATCGTGCTGGGGATCGATAA 8807 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||| || | ||| |||||| |||||||||||| |||| |||| ||| || Sbjct 8806 TTGTAATTATTTATCATGAACAAGGAATTCCTAGTAAGCGCAAGTCAACAGCTTGCGCTG 8747 Query 308 ATTACGTCCCTGCCCTTTGTA 328 |||| |||||||||||||||| Sbjct 8746 ATTATGTCCCTGCCCTTTGTA 8726 >seq8011 Length=973 Score = 205 bits (226), Expect = 2e-50 Identities = 204/261 (78%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | | || | |||||||||||||||||||||||||||| Sbjct 110 CTTCTTAGAGGGACACTTGGTGTTTAACCAAGGGAAGTTTGAGGCAATAACAGGTCTGTG 169 Query 131 ATGCCCTT-AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--A 187 |||||||| ||||||||||||| ||||| || ||||||||| | ||| |||| | | Sbjct 170 ATGCCCTTTAGATGTTCTGGGCTGCACGTGCACTACACTGATATGATCAATGAGTACTGA 229 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 |||| | || |||| ||||||| ||| | ||| | || |||||||||| | | Sbjct 230 AGACCTGGTCCAAAAGGATTGGGTAAACTTTTGAAATCGTATCATGCTGGGGATCAATAA 289 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||| || | ||| |||||| |||||||||||| |||| |||| ||| || Sbjct 290 TTGTAATTATTTATCATGAACAAGGAATTCCTAGTAAGCGCAAGTCAACAGCTTGCGCTG 349 Query 308 ATTACGTCCCTGCCCTTTGTA 328 |||| |||||||||||||||| Sbjct 350 ATTATGTCCCTGCCCTTTGTA 370 >seq4292 Length=2934 Score = 205 bits (226), Expect = 2e-50 Identities = 204/261 (78%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | | || | |||||||||||||||||||||||| ||| Sbjct 1944 CTTCTTAGAGGGACACTTGGTGTTTAACCAAGGGAAGTTTGAGGCAATAACAGGTCGGTG 2003 Query 131 ATGCCCTT-AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--A 187 |||||||| ||||||||||||| |||||| | ||||||||| | | |||| ||| | | Sbjct 2004 ATGCCCTTTAGATGTTCTGGGCTGCACGCACACTACACTGATACAATCAACAAGTACTGA 2063 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 |||| | || |||| ||||||| ||| | ||| | | ||||||||||| | | Sbjct 2064 AGACCTGGTCCAAAAGGATTGGGTAAACTTTTGAAATCATATTGTGCTGGGGATCAATAA 2123 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||| | | |||||||||| |||||||||||| |||| |||| ||| || Sbjct 2124 TTGTAATTATTTATTGTGAACGAGGAATTCCTAGTAAGCGCAAGTCAACAGCTTGCGCTG 2183 Query 308 ATTACGTCCCTGCCCTTTGTA 328 |||| |||||||||||||||| Sbjct 2184 ATTATGTCCCTGCCCTTTGTA 2204 >seq7942 Length=1669 Score = 118 bits (130), Expect = 2e-24 Identities = 119/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 177 CAACGAGTTC--ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 |||||||| | | |||| | ||| |||| ||||||| ||| | ||| | | |||| Sbjct 1660 CAACGAGTACTGAAGACCTGGTCCGAAAGGATTGGGTAAACTTTTGAAATCGTATTGTGC 1601 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 ||||||| || |||| ||||||| || | || ||||||| |||||||||||| |||| Sbjct 1600 TGGGGATCGATAATTGTAATTATTTATCGTGAATGAGGAATTCCTAGTAAGCGCAAGTCA 1541 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||| |||||||||||||||| Sbjct 1540 ACAGCTTGCGCTGATTATGTCCCTGCCCTTTGTA 1507 >seq1173 Length=5803 Score = 107 bits (118), Expect = 4e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 |||||||||| || |||| ||||||| || | |||||||||| |||||||||||| | Sbjct 4478 TGCTGGGGATCGATAATTGTAATTATTTATCGTGAACGAGGAATTCCTAGTAAGCGCAAG 4537 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| |||| ||| ||||||||||||||||||||||| Sbjct 4538 TCAACAGCTTGCGCTGATTACGTCCCTGCCCTTTGTA 4574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947111635712