Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3905 464 2e-128 seq3229 464 2e-128 seq6891 428 1e-117 seq6107 277 6e-72 seq1445 149 2e-33 >seq3905 Length=18311 Score = 464 bits (514), Expect = 2e-128 Identities = 281/297 (95%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| ||||||| | || |||||||||| || |||||||||||||||||| Sbjct 13206 CTCCCACTTATGCTACACCCCAGGAGACATTTCACAATCTCAGACTAGAGTCAAGCTCAA 13147 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 13146 CAGGGTCTTCTTTCCCCGCTGATTATGCCAAGCCCGTTCCCTTGGCTGTTGTTTCGCTAG 13087 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 13086 ATAGCAGATAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 13027 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13026 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 12967 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 12966 TCGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 12910 Score = 131 bits (144), Expect = 5e-28 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| | ||||||||||||||| ||| Sbjct 13482 CTTTTCTTCTACAAGAGATTTCTGTTCTCTTTGAGCTCATCTTAGGACACCTGCGCTATT 13423 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 13422 ATTTCACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAGAATGTC 13376 >seq3229 Length=21241 Score = 464 bits (514), Expect = 2e-128 Identities = 281/297 (95%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| ||||||| | || |||||||||| || |||||||||||||||||| Sbjct 16488 CTCCCACTTATGCTACACCCCAGGAGACATTTCACAATCTCAGACTAGAGTCAAGCTCAA 16429 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 16428 CAGGGTCTTCTTTCCCCGCTGATTATGCCAAGCCCGTTCCCTTGGCTGTTGTTTCGCTAG 16369 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 16368 ATAGCAGATAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 16309 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16308 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 16249 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 16248 TCGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 16192 Score = 131 bits (144), Expect = 5e-28 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| | ||||||||||||||| ||| Sbjct 16765 CTTTTCTTCTACAAGAGATTTCTGTTCTCTTTGAGCTCATCTTAGGACACCTGCGCTATT 16706 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 16705 ATTTCACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAGAATGTC 16659 >seq6891 Length=1253 Score = 428 bits (474), Expect = 1e-117 Identities = 294/331 (89%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 206 GGGTAGTGGTATTTCACTTGCG---CCGAAACGGCTCCCACTTATTCTACACCTCTCAAG 262 |||||||||||||||| || | | | ||||||||||| ||||||| | || Sbjct 435 GGGTAGTGGTATTTCAAGATCGTAACTTACGCTACTCCCACTTATGCTACACCCCAGGAG 494 Query 263 TCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCC 322 |||||||||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 495 ACATTTCACAATCTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCACTGATTAT 554 Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct 555 GCCAAGCCTGTTCCCTTGGCTGTTGTTTTGCTAGATAGCAGATAGGGACAGTGGGAATCT 614 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| Sbjct 615 CGTTCATCCATTCATGTGTGTCACTAATTAGATGACAAGGCATTTGGCTACCTTAAGAGA 674 Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 |||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| Sbjct 675 GTCATAGTTACTCCCGCCATTTACCCGTGCTTGGTCGAATTTCTTCACTTTGACATTCAG 734 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||| ||||||| Sbjct 735 AGCACTGGGCAGAAATCACATTGTGTCAACA 765 >seq6107 Length=1769 Score = 277 bits (306), Expect = 6e-72 Identities = 205/242 (85%), Gaps = 18/242 (7%) Strand=Plus/Plus Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||| ||||| | |||||| |||||| |||||||| |||||||||||||| || || | Sbjct 379 AACTGGGTC--CGTTCCCCACTGATTATGCCAAGCCTGTTCCCTTGGCTGTTGTGTCCC- 435 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 ||||||||||||| ||| |||||||||||| |||||||||||||| Sbjct 436 ---------------ACAGTGGGAATCTTGTTCATCCATTCATGCACGTCACTAATTAGA 480 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| Sbjct 481 TGACAAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGCCATTTACCTGCGCTT 540 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 541 GGTCGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACAC 600 Query 535 CA 536 || Sbjct 601 CA 602 >seq1445 Length=9778 Score = 149 bits (164), Expect = 2e-33 Identities = 136/169 (80%), Gaps = 7/169 (4%) Strand=Plus/Plus Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA---ACGG-- 236 ||| | | ||||||| | || |||||||||||||||| || || ||| Sbjct 2086 ATTAAATGAGTAAAATATCGTCCTGGGTAGTGGTATTTCAAGATCGT--AACTTACGTTA 2143 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| ||||||| | || |||||||||| || |||||||||||||||||| Sbjct 2144 CTCCCACTTATGCTACACCCCAGGAGACATTTCACAATCTCAGACTAGAGTCAAGCTCAA 2203 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2204 CAGGGTCTTCTTTCCCCGCTGATTATGCCAAGCCCGTTCCCTTGGCTGT 2252 Score = 131 bits (144), Expect = 5e-28 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| | ||||||||||||||| ||| Sbjct 1868 CTTTTCTTCTACAAGAGATTTCTGTTCTCTTTGAGCTCATCTTAGGACACCTGCGCTATT 1927 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1928 ATTTCACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAGAATGTC 1974 Score = 118 bits (130), Expect = 3e-24 Identities = 85/98 (87%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| | ||||||||||||||| ||| Sbjct 1490 CTTTTCTTCTACAAGAGATTTCTGTTCTCTTTGAGCTCATCTTAGGACACCTGCGCTATT 1549 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||| ||||||||||||||||||||||||||||||||| Sbjct 1550 ATTTCACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 1587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635047452192