Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3905 129 1e-27 seq3229 129 1e-27 seq3067 114 2e-23 seq6107 113 7e-23 seq9163 91.5 2e-16 >seq3905 Length=18311 Score = 129 bits (142), Expect = 1e-27 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | |||||| |||||||| ||||| ||| ||| ||| |||| Sbjct 13823 GTACGAGAGGAACTGTTGG-TTCAGA-TAATTGGTAAATGCGGTTGTTTGATCAGACAGT 13880 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| Sbjct 13881 GCCGCGAAGCTACCATCTGTCGGATAATGGCTGAACGCCTCTAAGCCAGAATCCATGC 13938 >seq3229 Length=21241 Score = 129 bits (142), Expect = 1e-27 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | |||||| |||||||| ||||| ||| ||| ||| |||| Sbjct 17103 GTACGAGAGGAACTGTTGG-TTCAGA-TAATTGGTAAATGCGGTTGTTTGATCAGACAGT 17160 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| Sbjct 17161 GCCGCGAAGCTACCATCTGTCGGATAATGGCTGAACGCCTCTAAGCCAGAATCCATGC 17218 >seq3067 Length=4915 Score = 114 bits (126), Expect = 2e-23 Identities = 96/115 (83%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 4 CGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCC 63 |||||||||| | | |||||| |||||||| ||||| ||| ||| ||| |||||| Sbjct 4915 CGAGAGGAACTGTTGG-TTCAGA-TAATTGGTAAATGCGGTTGTTTGATCAGACAGTGCA 4858 Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 || ||||||||||||| |||| ||||||||||||||||||| |||||||||||| Sbjct 4857 GCAAAGCTACCATCTGTCGGATAATGGCTGAACGCCTCTAAGCCAGAATCCATGC 4803 >seq6107 Length=1769 Score = 113 bits (124), Expect = 7e-23 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 ||||||||| ||||| ||| ||| ||| ||||||| |||||||||||||| ||||| Sbjct 57 ATAATTGGTAAATGCGGTTGTTTGATCAGACAGTGCCATGAAGCTACCATCTGTTGGATA 116 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||| |||||||||||| Sbjct 117 ATGGCTGAACGCCTCTAAGCCAGAATCCATGC 148 >seq9163 Length=1520 Score = 91.5 bits (100), Expect = 2e-16 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 39 TGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGC 98 ||| | ||| ||| ||| |||||||| |||||||||||||| ||| |||||||||| | Sbjct 398 TGCAGTTGTTTGATCAGACAGTGCCGTGAAGCTACCATCTGTCAGATAATGGCTGAACAC 339 Query 99 CTCTAAGTCAGAATCCATGC 118 ||||||| |||||||||||| Sbjct 338 CTCTAAGCCAGAATCCATGC 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819125965056