Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= AAMG01002051.1 Length=353 Score E Sequences producing significant alignments: (Bits) Value seq5051 145 2e-32 seq9540 140 7e-31 >seq5051 Length=4452 Score = 145 bits (160), Expect = 2e-32 Identities = 251/356 (71%), Gaps = 9/356 (3%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||| ||||| ||||| ||||| |||||| ||||||| | ||||||||| | | Sbjct 3880 CGACCGCATGCGCTTCGTGGCCGAGCGTGCCGAGGTGGGTGAGGCGCGCGAAGCGGTGTT 3939 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCG-TTCTGCGAGGCCGTGGGCA 119 ||| ||||| || |||||| ||| |||||||||| |||| ||||||||| || |||| Sbjct 3940 CGCGGTGACGATCCCCGAGGAGCGCGGCAGCTTCC-GGCGATTCTGCGAGCTGGTCGGCA 3998 Query 120 AGCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGC-AGCGAGGCGCACATCTTT 178 |||| | ||||| ||||||||||| || || | | |||| ||||||||||| Sbjct 3999 CGCGCAGCGTGACCGAGTTCAACTACCGCATCGACGATGCCGAGCG-CGCGCACATCTTC 4057 Query 179 GTCGGCGTGCAGACCCACCCCGACACCGA-CCCCCGCAGCGCGCTGATCGCCAGCCTGAC 237 || |||||||||| || | | | ||| | | |||| ||| || || | | Sbjct 4058 GTGGGCGTGCAGATCCGCAACCGCGGCGAGTCGCAGCAGATCGC-GAAGACCTTCGT--- 4113 Query 238 CGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCG 297 ||| || ||||||||| | || || |||| | || || | |||| ||||||||| Sbjct 4114 CGATCACGGTTTCCCGACCGTCGATCTCACCGGCGACGAACTCTCGAAGCAGCACATCCG 4173 Query 298 CCATATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTTCG 353 | | ||||| ||||| | || ||| || | | ||| |||||||||||| Sbjct 4174 CTACATGGTGGGCGGGCGCTCGCCGCTCGCGCACGACGAACGCCTGTTCCGCTTCG 4229 >seq9540 Length=1484 Score = 140 bits (154), Expect = 7e-31 Identities = 247/357 (69%), Gaps = 11/357 (3%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||| ||||| || || || ||||| || |||| |||| ||||||||| || | Sbjct 938 CGACCGCATGCGCTTCGTCGCCGAACGCGCGGAAGTGGGCGAAGCGCGCGAAGCGGTCTT 997 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCG-TTCTGCGAGGCCGTGGGCA 119 ||| ||||| || ||||| ||| |||||||||| ||||| ||||||||| | |||| Sbjct 998 CGCGGTGACGATCCCCGAAGAGCGCGGCAGCTTC-AGGCGCTTCTGCGAGCTGCTCGGCA 1056 Query 120 AGCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTG 179 |||| ||||||| ||||||||||| || | || | | |||||| || || | Sbjct 1057 CGCGCAGCGTCACCGAGTTCAACTACCGGATCGCCGACGCGAACTCGGCGCATATTTTCG 1116 Query 180 TCGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCG 239 |||||||||||| || | || ||| | |||| ||||||| || || Sbjct 1117 TCGGCGTGCAGATCCGCAATCGCAGCGAATC------GGCGCAGATCGCCGGCGCCTTCG 1170 Query 240 A---GCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCC 296 | ||| ||||| | | ||||||||| | || ||| | |||| |||||||| Sbjct 1171 AAGCGCACGGTTTTGCCACCGTCGACCTGACCTTCGACGAACTGTCGAAGCAGCACATCC 1230 Query 297 GCCATATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTTCG 353 || | ||||||||||||| || ||| || || | ||| |||| ||||||| Sbjct 1231 GCTACATGGTCGGCGGCCGCTCGCCGCTCGCGCGCGACGAACGACTGTTTCGCTTCG 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026484175136