Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq1570 136 9e-30 seq5322 132 1e-28 >seq1570 Length=18335 Score = 136 bits (150), Expect = 9e-30 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 250 CACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTT 309 |||||| ||||||||||| || ||||| ||||||||||||||||| || ||||||||||| Sbjct 3242 CACCCATGTGTCCTTGGTGCCGCCGCCCTGCGACGAGTTGACGACGAGGGAGCCTTCCTT 3301 Query 310 CAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAGAGCACGAA 369 |||||||||||| || | ||| || | | ||| || | |||||| ||||||||||| Sbjct 3302 CAGCGCCACGCGCGTGAGGCCGCCAGCCGCCATCTGGATCGTCTTGCCGGAGAGCACGAA 3361 Query 370 GGGTCGCAAGTCG 382 ||| ||||| ||| Sbjct 3362 GGGCCGCAAATCG 3374 >seq5322 Length=4074 Score = 132 bits (146), Expect = 1e-28 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 237 CTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCA 296 |||||| ||| | ||||||||||||||| || || ||||| ||||| || ||||| || | Sbjct 920 CTCAGCGCTCGAGCACCCAGGTGTCCTTCGTGCCGCCGCCCTGCGAGGAATTGACCACGA 861 Query 297 GCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGC 356 ||||||| || |||||| || || || | || || ||||||| |||| |||||||| Sbjct 860 GCGAGCCCTCGCGCAGCGCGACCCGCGTGAGCCCGCCCGGCACCATGCGGACTTCCTTGC 801 Query 357 CCGAGAGCACGAAGGGTCGCAAGTCG 382 ||||||||||||| || |||| |||| Sbjct 800 CCGAGAGCACGAACGGGCGCAGGTCG 775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119219505600