Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq27498 138 2e-30 seq47670 98.7 2e-18 >seq27498 Length=503 Score = 138 bits (152), Expect = 2e-30 Identities = 164/223 (74%), Gaps = 12/223 (5%) Strand=Plus/Plus Query 116 AATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAG 175 ||||||||||| || ||||||||||||||||||||||||||||||| |||| || || Sbjct 114 AATAACAGGTCAGTCATGCCCTTAGATGTTCTGGGCCGCACGCGCGTTACAATGGCATGT 173 Query 176 CCAACGAGTTCATCA----------CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||||| | | | || ||||| |||||| ||||| | | || | Sbjct 174 AAAACGAGTGCTTGAACAAGGCGTCCCACGGCCGAAAGGTCGTGGTAACCCT--TAGTCC 231 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 ||| || |||| ||| | |||||||||||| ||| |||||||||| |||||| Sbjct 232 CTGCTTTGACTGGGACAGATCTTTGCAATTATTGGTCTCAAACGAGGAATTTTTAGTAAT 291 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||| | | ||||||| | ||||||||||||||||| Sbjct 292 CGCAGGTCATTAACCTGCGTTGAATGCGTCCCTGCCCTTTGTA 334 >seq47670 Length=304 Score = 98.7 bits (108), Expect = 2e-18 Identities = 136/190 (72%), Gaps = 13/190 (7%) Strand=Plus/Minus Query 116 AATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAG 175 ||||||||||| || ||||||||||||||||||||||||||||||| |||| || || Sbjct 194 AATAACAGGTCAGTCATGCCCTTAGATGTTCTGGGCCGCACGCGCGTTACAATGGCATGT 135 Query 176 CCAACGAGTTCATCA----------CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||||| | | | || ||||| |||||| ||||| | ||| | Sbjct 134 AAAACGAGTGCTTGAACAAGGCGTCCCACGGCCGAAAGGTCGTGGTAACC--CTTAGTCC 77 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 ||| || |||| ||| | |||||||||||| ||| |||||||||| || ||| Sbjct 76 CTGCTTTGACTGGGACAGATCTTTGCAATTATTGGTCTCAAACGAGGAATTTTTA-TAAT 18 Query 286 CGCGTGTCAT 295 ||| ||||| Sbjct 17 CGCAGGTCAT 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946539924736