Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2575 370 3e-100 seq311 172 2e-40 seq48799 165 3e-38 >seq2575 Length=10330 Score = 370 bits (410), Expect = 3e-100 Identities = 301/363 (83%), Gaps = 4/363 (1%) Strand=Plus/Plus Query 178 CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGC 237 ||||||| ||||| || |||| | | || ||||||||||| |||||| || Sbjct 2627 CTTCATTCGATAAGTGAAGCAACGTTCCGAGTGGTGGTATTTCATTTGCGCTTGC---GC 2683 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 | |||| ||| ||||||||| | ||| |||| || | |||| ||||||| |||||| Sbjct 2684 TTCCACCTATACTACACCTCAGATGTCGCCGCACAGAGCCAGACTGGAGTCAAACTCAAC 2743 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||| | || |||| ||||||||||| |||| ||||||||||| Sbjct 2744 AGGGTCTTCTTTCCCCGCTTAGCCCTTCAAGTCCGTTCCCTTGACTGTCGTTTCGCTAGA 2803 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||| | ||||||| ||||||||| |||||||||||||||||||| |||||| || || Sbjct 2804 TAGTAACTCGGGACAGAGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTGGAAGA 2863 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 2864 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCGTCGG 2923 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG-TCAACATCA 536 ||||| || |||| ||||||||||||||||||||||||||||| ||||| | ||| || Sbjct 2924 TGAATCTCGTCACGTTGACATTCAGAGCACTGGGCAGAAATCAGTTTGCGATATACACCA 2983 Query 537 CTT 539 ||| Sbjct 2984 CTT 2986 Score = 114 bits (126), Expect = 4e-23 Identities = 91/108 (84%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || ||||| ||||||||||||| | |||| | |||||||||||||||||| | Sbjct 2273 CTTGTGTTCTACGTGAGATTTCTGTTCCCACTGAGCTCGCCTTAGGACACCTGCGTTGTC 2332 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA-ATGTC 113 || |||||||| ||||||||||||||||||||||| ||| || ||||| Sbjct 2333 GTGTAACAGATATGCCGCCCCAGCCAAACTCCCCATCTGGCAGATGTC 2380 >seq311 Length=120508 Score = 172 bits (190), Expect = 2e-40 Identities = 104/110 (95%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 115866 CTTCTTTCCCCGCTAATTGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 115807 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 | ||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 115806 GGTAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACAAATTA 115757 Score = 165 bits (182), Expect = 3e-38 Identities = 102/109 (94%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 115265 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGAGC 115206 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||||| ||||| || ||| |||| |||||||||||||||||||||| Sbjct 115205 TTGGTTGGATTTCGCCATTTTAACATCCAGAGCACTGGGCAGAAATCAC 115157 Score = 159 bits (176), Expect = 1e-36 Identities = 143/178 (80%), Gaps = 5/178 (3%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG--GACTAGAGTCAAGCTC 294 ||||||| ||| |||||||| | | ||| || | ||| | |||||||||||||| Sbjct 113891 CTCCCACCTATGCTACACCTTTAGAATCACCTCGC---GTCTATGCCTAGAGTCAAGCTC 113835 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||| | ||| |||||||||||||||||||||||||||||||| Sbjct 113834 AACAGGGTGCGGGGAAAGAAGTAATTGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 113775 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 113774 AGATAGTAGGTAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACAAATTA 113717 >seq48799 Length=297 Score = 165 bits (182), Expect = 3e-38 Identities = 102/109 (94%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 65 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGAGC 124 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||||| ||||| || ||| |||| |||||||||||||||||||||| Sbjct 125 TTGGTTGGATTTCGCCATTTTAACATCCAGAGCACTGGGCAGAAATCAC 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634060478176