Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10073 387 4e-105 seq2575 147 7e-33 seq311 105 2e-20 >seq10073 Length=1366 Score = 387 bits (428), Expect = 4e-105 Identities = 421/557 (76%), Gaps = 59/557 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 672 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 613 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 553 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 552 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 493 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 492 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 433 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286 || | |||||| | | ||||| || ||||||| || |||| Sbjct 432 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 373 Query 287 --------------CGAAGGGC-------GTTGGTTTTTTATCTAATAAATACA------ 319 || |||| ||||| |||| |||| |||||| || Sbjct 372 CCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 314 Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 |||| ||||| ||||| | |||||||||||||||||||||||||| || Sbjct 313 CCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 256 Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||| |||| | || | | | |||| ||| ||||||||||||||||||||||| Sbjct 255 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 196 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 195 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 136 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 135 CATATG-CTACTGGCAG 120 >seq2575 Length=10330 Score = 147 bits (162), Expect = 7e-33 Identities = 119/143 (83%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||| ||||||||||||||||||| ||| | || |||||||| |||||||||||||| Sbjct 8615 ATTGGGCAATTTGCGCGCCTGCTGCCCTCCGTAGAAGTGGTAGCTATTTCTCAGGCTCCC 8674 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 ||||||||||||||||||||| ||||| | ||||| | |||||| || |||||| | Sbjct 8675 TCTCCGGAATCGAACCCTAATCCCCCGCT-CCCGTCAACGCCATGGCAGTCCACTACACG 8733 Query 193 ACCATCGAAAGTTGATAGGGCAG 215 ||||| || ||||||||||| Sbjct 8734 GCCATCACCAGCTGATAGGGCAG 8756 Score = 84.2 bits (92), Expect = 7e-14 Identities = 79/98 (81%), Gaps = 6/98 (6%) Strand=Plus/Plus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC--TTATACTTAGACATGCA 466 ||||| ||||||||||| ||||| ||| ||| | | ||| | || || || |||||| Sbjct 8998 CTGATGTAATGAGCCATGCGCAGATTC-CTGCAAA---TGCAGTGATTCTGAGGCATGCA 9053 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| | || |||| |||||||||||||||||||||| Sbjct 9054 TGGCTAAGTCCTTGAAACAAGCATATGACTACTGGCAG 9091 >seq311 Length=120508 Score = 105 bits (116), Expect = 2e-20 Identities = 112/144 (78%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 |||| | |||||||||||||||||||||| || ||| ||| | |||||||| | ||| Sbjct 108849 TGGGAACGTTGCGCGCCTGCTGCCTTCCTTAGAAGTGTGAGCAATCTCTCAGGCCCACTC 108790 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA-GGCCACTATCCTA 193 ||| | |||||||||| | ||| | ||||||||| |||||||| | | || || || Sbjct 108789 TCCAGGATCGAACCCTTA-TCCTCTGTACCCGTTGTTACCATGGCATGTCCGTTACGCTG 108731 Query 194 CCATCGAAAGTTGATAGGGCAGAA 217 ||||| |||||||||| ||||| Sbjct 108730 CCATC--TAGTTGATAGGTCAGAA 108709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509347447552