Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11685 181 8e-41 seq612 178 1e-39 >seq11685 Length=1128 Score = 181 bits (200), Expect = 8e-41 Identities = 383/562 (68%), Gaps = 11/562 (2%) Strand=Plus/Plus Query 61038 GCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCAT 61097 ||| ||||| || || | ||| | ||||| ||| |||| | || || ||||||| Sbjct 572 GCAGGAGAACCCGTTCCGCTACGTTCTCTTCCCAATCCAGTACCATGACATCTGGCGCAA 631 Query 61098 GTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||| || ||| |||| | | ||||||||| |||||| |||| || ||| |||| Sbjct 632 GTACAAGGAGCAGGAGAGCTGCAT-CTGGACGGTCGAGGAGATCGACCTGGGCAACGACA 690 Query 61157 TGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 |||| ||||||| | || | | ||| ||| || | || ||||| || |||||| | || Sbjct 691 TGAAGGACTGGGCAACGCTGAACGA-CGGGGAGCGGCACTTCATCAAGCATGTGCTCGCC 749 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| |||| ||||| || |||| |||||| | | | || ||| | || Sbjct 750 TTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTCGCGCAGCGCTTCATGAGCGAC 809 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||| | ||| | |||||||| |||||||| |||||| | |||||||| ||||| Sbjct 810 GTGAAGGTGCCAGAGGCGCGCGCATTCTACGGGTTCCAGCTGATGATGGAGAACATCCAC 869 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAAC 61393 ||||||| |||| ||| || | || |||||||||| || |||| | ||| || | Sbjct 870 TCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG--C 927 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | || | | || || ||||||| ||| | || ||| ||||| |||||| | Sbjct 928 GGCTGCTGCACGCGATACAGACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGC 987 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| || || | || | ||| || || || | | ||||| | ||| | Sbjct 988 GGTGGATCGGGAG--CAGC-GCGAGCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGG 1044 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || || || ||||| |||| | || ||| ||||||| || || || | Sbjct 1045 AGGGCATTTTCTTTTCCGGGTCGTTCTGCGCACTGTTCTGGCTGAAGAAGCGCGGTCTGA 1104 Query 61574 TGCCCGGTCTGACCTTCAGCAA 61595 |||| || ||||| |||||||| Sbjct 1105 TGCCAGGGCTGACGTTCAGCAA 1126 >seq612 Length=73199 Score = 178 bits (196), Expect = 1e-39 Identities = 351/516 (68%), Gaps = 5/516 (1%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 || ||||| || || |||| ||| || |||||||| ||||| | |||||| || ||||| Sbjct 23690 ACGAACTTAGGTAGCGCAATAGACGCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTG 23749 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || |||| || || ||||| || || || || ||||| || | || || ||||| Sbjct 23750 TATTCGATTATCTCTGTGCAGAGGTTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTC 23809 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||| | ||| | |||||||||| |||||||||| | |||||||| | ||| | | Sbjct 23810 GACTTCCTGTTGGCCGAGTCCTTGTACAGCATGTACGGATTACCGGTCTCTATTTGAGCC 23869 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA--CCTTTGC 66230 || | |||||| ||| | | | | ||||||| || | | | | || | ||| | Sbjct 23870 TCGAGGATGGCAAACCACAAATCTTGGGCCTTCATTGT-CTTCCTGGCCAAGCCCTCAGT 23928 Query 66231 --GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGG 66288 |||| || | ||| | | ||||| ||| ||||| || || | || | | Sbjct 23929 TTGTTCATACTTGGTGTACAACTCCTCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTT 23988 Query 66289 ACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAG 66348 | | || || || | || ||||| ||||||| | || ||||| ||| || || Sbjct 23989 AGCTTCGTTGGGGCAGAAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAG 24048 Query 66349 ATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408 ||| || | ||| || |||||||| | || || || || | |||||| ||||| || Sbjct 24049 ATCTGGGACCCAAAGTGCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTT 24108 Query 66409 TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 ||||| | |||||||| | ||||| |||||||| ||||||||||| | || || Sbjct 24109 CTTGCGAAGATCGAGGAAAGATATAATGTCAGCATGCCAGGGTTCCAGGTAAACTGCAAA 24168 Query 66469 CGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 | ||| | || |||||||| |||||||| || || Sbjct 24169 GGCTCCCTTTCGCTTGCCGCCTCCTTGGTCAACATA 24204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397230341397680