Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq2996 628 9e-176 >seq2996 Length=8617 Score = 628 bits (696), Expect = 9e-176 Identities = 1119/1619 (69%), Gaps = 19/1619 (1%) Strand=Plus/Minus Query 28387 ACTGCCTGCCCGGACTGGGCAGAGCGCCTGAAAAAGGGGCTGTCGATTATTCCGGCTCCG 28446 ||||| || || || ||||| || || || || | ||||| |||||| ||||| | || Sbjct 7386 ACTGCTTGTCCCGATTGGGCCGAACGGCTCAAGACGGGGCGGTCGATCATTCCACCGCCA 7327 Query 28447 ATTTATCCGGACCAGGCTGCACATGCACTGGCGATTTTTAAACAACTGCGGATTGTGGAT 28506 || | || || ||||| | || || || || | || || || || ||||||||| Sbjct 7326 ATCTTCCCCGAGCAGGCAGAGCAGGCGCTTGCTGTGTTCAAGGAATTGAAGATTGTGGAC 7267 Query 28507 GCACCGGGTAGCCCGACGTTCGGGGAGTCCTGTGCACCGTGGGTGTTTGACCTGGTGGCG 28566 || |||||||||||||||||||| ||||| | || | ||||| || || ||||| ||| Sbjct 7266 GCGCCGGGTAGCCCGACGTTCGGCGAGTCATCGGCGCAATGGGTCTTCGATCTGGTCGCG 7207 Query 28567 GCCCTGTTTGGCTCCTACGATGCGCAGACCGGTGTTCGCCATATCAAGGAAGTTTTTATC 28626 | | || ||| | ||||| || ||| ||| ||||| |||| || || || Sbjct 7206 TCGATCTTCGGCGCATACGACGCTGAGAACGGGCGTCGCCTGATCACAGAGTGGTTCGTC 7147 Query 28627 CTTATCCCCAAGAAAAACTCGAAGTCCACGCTGGCCGCAGGGATCATGATGACTGCACTG 28686 ||||||||||| ||| || || |||||||||||||| ||||||||||| || || Sbjct 7146 TGCATCCCCAAGAAGAACAGCAAATCGACGCTGGCCGCAGGAATCATGATGACGGCCATG 7087 Query 28687 TTACTGAACTGGCGGCAGGCGGCGGGCTACACGATTCTGGCCCCGACAGTGGAGGTGGCA 28746 | ||||| ||||| | |||||| ||| ||||||| || || || | ||||| || Sbjct 7086 ATCCTGAATTGGCGCATGTCGGCGGAATACGCGATTCTCGCGCCAACGATCGAGGTCGCC 7027 Query 28747 GCCCACGCCTTCAACCCTGCCAGGGATATGGTACGACGGGACGATGATCTGGATGACCTC 28806 || |||| || | || ||||| | || || || || || |||||| Sbjct 7026 AATAACAGCTTCGCGCCGAGTCGCGACATGGTGAAGCACGAGGACGAGCTCGACGACCTC 6967 Query 28807 TGTCAGGTGCAGACACATATCCGGACCATCACCCACCGGGTGACAGACACCACCCTGAAG 28866 | ||||||||| |||| ||| ||| ||||| ||||| || | | | | |||||| Sbjct 6966 TTCCAGGTGCAGGCACACATCAAGACGATCACGCACCGCACGAGCGGCGCGATGCTGAAG 6907 Query 28867 GTGGTGGCAGCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGTACGCTGATTGAT 28926 || || || || ||| |||| ||||| ||||||| ||| ||| || |||||||| || Sbjct 6906 GTCGTCGCGGCTGATTCGAACACGGTTTCCGGTAAGAAGAGCGTCGGCACGCTGATCGAC 6847 Query 28927 GAGCTGTGGCTGTTTGGCAAGCAGTACAAGGCGGAGGACATGTTACGTGAAGCCATCGGT 28986 ||||||||||| || ||||| ||| | || ||||||||| | || || || | |||| Sbjct 6846 GAGCTGTGGCTTTTCGGCAAACAGCCGGATGCTGAGGACATGCTGCGCGAGGCGACCGGT 6787 Query 28987 GGCCTTGCCTCCCGCCCGGAAGGGTTTGTGGTGTATACGACCACCCAGTCGAATGAACCT 29046 || || || || ||||||||||| || || | || ||| || |||||||| || || Sbjct 6786 GGTCTGGCTTCGCGCCCGGAAGGCTTCGTCATATACCTGACGACGCAGTCGAACGACCCG 6727 Query 29047 CCCGCCGGGGTGTTCAGACAGAAACTGCAGTACGCCCGGGATGTGCGCGACGGCAAAATT 29106 || || || ||||| || || || | ||||| || || |||||||||||||| ||| Sbjct 6726 CCTGCAGGTGTGTTTCTGCAAAAGCTTCGATACGCGCGCGACGTGCGCGACGGCAAGATT 6667 Query 29107 CATGATCCGCACTTTCTGCCGGTGATCTTTGAACACCCTCCTGAAATGGTGGAAAGCGGG 29166 || ||| ||| ||||||||||||| || || || || |||||| | | ||| | Sbjct 6666 GTCGACCCGTGCTTCGTGCCGGTGATCTTCGAGCATCCGCCCGAAATGATCGCCAGCAAG 6607 Query 29167 GCTCACCTGCTGATGGAAAACCTCGCCATGGTCAATCCGAATCTCGGCTATTCAGTGGAT 29226 | |||||| | | ||||||||||| |||||||| ||||| |||| | ||| || ||| Sbjct 6606 GAGCACCTGAAGGTCGAAAACCTCGCGATGGTCAACCCGAACTTCGGATTTTCCGTCGAT 6547 Query 29227 GAGGCCTTTCTGTACCGGGAGTATCGAAAAGCACGGGAAGCCGGTGAAGAGACATTCCGG 29286 |||| | ||| | || |||| ||| || || |||| | || |||||| | ||||| Sbjct 6546 CAGGCGTATCTCGAGCGCGAGTTTCGCAAGGCGAAGGAAACGGGCGAAGAGTCGTTCCGC 6487 Query 29287 GGCTTCATGTCAAAACACGCCAATGTGGAAATTGGTCTTGCCCTGCGCTCTGACCGCTGG 29346 |||||| | | || || || || || || || || || || |||||||| || |||||| Sbjct 6486 GGCTTCCTTGCGAAGCATGCGAACGTCGAGATCGGCCTGGCACTGCGCTCGGATCGCTGG 6427 Query 29347 GCGGGGGCGGATTTCTGGGAA-GAGCAGGGCCGTTGTA---TCAGCCTGGACGATATCCT 29402 || || ||||| ||||||||| | || | | || | | || || ||||| | || Sbjct 6426 GCCGGTGCGGACTTCTGGGAAGGCGCCGCG-CGCGGGACGCGCACGCTAGACGAACTGCT 6368 Query 29403 GCTGCGTGCT--GATGTGGT-GACAGTGGGGATTGACGGCGGAGGGCTGGATGATCTGCT 29459 |||| ||| || ||||| ||| || |||||||||||||| || || ||||| ||||| Sbjct 6367 --TGCGCGCTGCGAGGTGGTCGAC-GTTGGGATTGACGGCGGCGGCCTCGATGACCTGCT 6311 Query 29460 GGGGATGTATGTGATTGGGCGTGACAGGGAAACCCGCGAATGGCTGGGCTGGGGCCATGC 29519 ||| | |||| | || || || | | ||| || | ||||| | ||| ||||| Sbjct 6310 CGGGTTTGCTGTGGTGGGTCGAGAGCGCGGCACCGGCAACTGGCTAGCGTGGTCGCATGC 6251 Query 29520 CTGGGCGCATGAAACCGCGGTGGTCCGACGGAAGAGCGAGGCGTCCCGGTTTCAGGATCT 29579 |||||||||| ||| | | | || || ||| ||| ||| | || ||| | ||| | Sbjct 6250 CTGGGCGCATCCGTCCGTGCTCGAGCGGCGAAAGTCCGAAGCGGCACGTTTTAACGATTT 6191 Query 29580 TGTTGCCTGTGGAGATATGACCATTGTCCGGCGTGTCGGGGATGACACGGCGGAAGTGGC 29639 | || | || || |||| | ||| || |||| || ||| || || || || Sbjct 6190 TTCTGACGACGGCGACCTGACGCTGGTCGAGCACATCGGCGAGGACGTCGCCGATGTCGC 6131 Query 29640 GGAATATGTGCGTC-GC--ATTCATGAGGCTGAGT-TACTGGACCATATCGGTATTGACC 29695 || || | |||| || | | | | | || | || ||| | ||||| | |||| Sbjct 6130 GG-ATCT---CGTCAGCCAGTGCGAGTCGTCGGGTCTGCTCGACAAGGTCGGTGTCGACC 6075 Query 29696 CGTCAGGGGTGGGGCAGATTCTGGATTCACTGGCGGAAGCCGGGATCCCCGACGGAATTG 29755 || | || | || | | || || | |||| || || || | || || | | | Sbjct 6074 CGGCCGGCATCGGCGCGGTGCTCGACGCGCTGGTCGATGCTGGTGTTCCAGAGGACAAGG 6015 Query 29756 TGGTGGGGATAAGCCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACCGAGCGCAAAC 29815 || | || || ||||||||||| || || || || || || || |||||||||| Sbjct 6014 TGATCGGCATTTCGCAGGGCTGGAAGCTCGGGGGTGCAATCAAGACGACCGAGCGCAGGA 5955 Query 29816 TGGCTGAAGGGGTGCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGTGTCGGCAATG 29875 | || || || | |||| |||| || | ||| | | ||||||||||||| |||||||||| Sbjct 5954 TCGCCGAGGGCGCGCTGCTGCACGGCGGCCAACGCATGATGGCCTGGTGCGTCGGCAATG 5895 Query 29876 CCCGGGTGGAGCCTAAAGGTAACGCCATTCTTATCACCAAACAGGCCAGTGGACGGGGAA 29935 | || || ||||| || || || || || || || |||||||| || ||| || | Sbjct 5894 CGCGCGTCGAGCCGCGCGGCAATGCAATCCTGATTACGAAACAGGCAAGCGGATCGGCCA 5835 Query 29936 AAATTGACCCGCTGATGGCGCTGTTCAATGCGGTCTCCCTGATGTCCCTTAACCCGGAA 29994 | || |||||||||||||| || || || || || || |||| ||| |||||| || Sbjct 5834 AGATCGACCCGCTGATGGCACTTTTTAACGCCGTGTCGTTGATCAGCCTCAACCCGCAA 5776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175400330201052