Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq393 89.7 7e-16 >seq393 Length=22713 Score = 89.7 bits (98), Expect = 7e-16 Identities = 160/233 (69%), Gaps = 23/233 (10%) Strand=Plus/Minus Query 11 CATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGT 70 || |||||| |||| |||| || |||||||| || || | || ||| | ||||||| Sbjct 10201 CAGCACCGGACAGGTATCAGACCCTATACATCATGTTGCCATTTT-GCAGAGTCCTGTGT 10143 Query 71 TTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTT 130 ||||| |||||||||||| |||||| || ||| | || | | || Sbjct 10142 TTTTATTAAACAGTCGCTACCCTCTCTTTTCTT--------------TTGAC-CTTTTTT 10098 Query 131 CACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACC 190 || ||||| | ||||||||||||||| | | ||||||||||| |||||| | Sbjct 10097 CAAA------GGCACTCTTTCTCCCGAAGTTACAGAGTCATTTTGCCGAGTTCCTTCAAT 10044 Query 191 ACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 | ||||| | || ||||| ||| ||||| | ||||||||||||||| Sbjct 10043 ATCATTCACTC-TACACCTTAATATACTCTATCAATTAACCTGTGTCGGTTTA 9992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694391739244